miRNA display CGI


Results 41 - 60 of 352 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 3' -65.7 NC_006151.1 + 64290 0.66 0.466639
Target:  5'- aGCGCCGcguUGuCgGGCgugccgcagcGCGCCGUGCUg -3'
miRNA:   3'- gCGCGGU---ACcGgCCGa---------CGCGGCGCGA- -5'
29602 3' -65.7 NC_006151.1 + 142313 0.66 0.466639
Target:  5'- aGCGCCGUaugggGGCCcGCgcgcucgcgGCGCC-CGCUu -3'
miRNA:   3'- gCGCGGUA-----CCGGcCGa--------CGCGGcGCGA- -5'
29602 3' -65.7 NC_006151.1 + 14833 0.66 0.466639
Target:  5'- cCGCGcCCAUGGaCCGGguCUGgGCCGa-CUg -3'
miRNA:   3'- -GCGC-GGUACC-GGCC--GACgCGGCgcGA- -5'
29602 3' -65.7 NC_006151.1 + 52472 0.66 0.466639
Target:  5'- gGCGCCGguaGGCCgccgugacGGCcucggGCGCCagcccgggGCGCUg -3'
miRNA:   3'- gCGCGGUa--CCGG--------CCGa----CGCGG--------CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 129691 0.66 0.466639
Target:  5'- gGcCGCCGUGGaCC-GCgGCGCCGaGCa -3'
miRNA:   3'- gC-GCGGUACC-GGcCGaCGCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 64381 0.66 0.457833
Target:  5'- uCGagGCCGUGGCCaGCc-CGCgGCGCa -3'
miRNA:   3'- -GCg-CGGUACCGGcCGacGCGgCGCGa -5'
29602 3' -65.7 NC_006151.1 + 138184 0.66 0.457833
Target:  5'- aCGUgGCCAUGGCgccCGuGCUGCGgcaccucgaCGCGCa -3'
miRNA:   3'- -GCG-CGGUACCG---GC-CGACGCg--------GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 15281 0.66 0.449116
Target:  5'- aGCGCCcc-GCUGcGCagcGCGCUGCGCg -3'
miRNA:   3'- gCGCGGuacCGGC-CGa--CGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 28188 0.66 0.449116
Target:  5'- aGUGCCGUcGGCCGGgc-CGCCaCGCa -3'
miRNA:   3'- gCGCGGUA-CCGGCCgacGCGGcGCGa -5'
29602 3' -65.7 NC_006151.1 + 51796 0.66 0.449116
Target:  5'- cCGCuCCA-GGCUcaGGCccUGCGaCCGCGCg -3'
miRNA:   3'- -GCGcGGUaCCGG--CCG--ACGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 62187 0.66 0.449116
Target:  5'- gGcCGCCcUGGCCGuguucacgcuGCUgGCGCUgGCGCUg -3'
miRNA:   3'- gC-GCGGuACCGGC----------CGA-CGCGG-CGCGA- -5'
29602 3' -65.7 NC_006151.1 + 63491 0.66 0.449116
Target:  5'- gGCGCCcgaagaagGUGGCCaGGUgGgGgCGCGCg -3'
miRNA:   3'- gCGCGG--------UACCGG-CCGaCgCgGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 129147 0.66 0.449116
Target:  5'- aGCGCCGgcgcacacUGGCucuCGGCcaCGUCGCGCa -3'
miRNA:   3'- gCGCGGU--------ACCG---GCCGacGCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 117234 0.66 0.449116
Target:  5'- aCGCGCgCGUccacgucggcgGGCCcgaGGCgcGgGCCGCGCg -3'
miRNA:   3'- -GCGCG-GUA-----------CCGG---CCGa-CgCGGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 114140 0.66 0.449116
Target:  5'- cCGCcgaGCCGcGGCUcgGGCgcaGCGaCCGCGCg -3'
miRNA:   3'- -GCG---CGGUaCCGG--CCGa--CGC-GGCGCGa -5'
29602 3' -65.7 NC_006151.1 + 59866 0.66 0.457833
Target:  5'- aGCuGCCGcagcaccgcUGGCUGGCgaagGCGUccaggCGCGCg -3'
miRNA:   3'- gCG-CGGU---------ACCGGCCGa---CGCG-----GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 89830 0.66 0.457833
Target:  5'- aGCGCgAUGcuGCCGGCguagGCGUgggUGUGCg -3'
miRNA:   3'- gCGCGgUAC--CGGCCGa---CGCG---GCGCGa -5'
29602 3' -65.7 NC_006151.1 + 90341 0.66 0.457833
Target:  5'- gGCGCagCAUGGCCaugaGGCUGgcgaCGCCGaGCa -3'
miRNA:   3'- gCGCG--GUACCGG----CCGAC----GCGGCgCGa -5'
29602 3' -65.7 NC_006151.1 + 96389 0.66 0.457833
Target:  5'- gCGCGCgGUG-CCGGCgcacgGCGgCCGCcaccGCg -3'
miRNA:   3'- -GCGCGgUACcGGCCGa----CGC-GGCG----CGa -5'
29602 3' -65.7 NC_006151.1 + 101100 0.66 0.457833
Target:  5'- gGgGCCcgGGUCgGGCgucucGUGCCuGCGCUc -3'
miRNA:   3'- gCgCGGuaCCGG-CCGa----CGCGG-CGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.