Results 41 - 60 of 352 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29602 | 3' | -65.7 | NC_006151.1 | + | 64290 | 0.66 | 0.466639 |
Target: 5'- aGCGCCGcguUGuCgGGCgugccgcagcGCGCCGUGCUg -3' miRNA: 3'- gCGCGGU---ACcGgCCGa---------CGCGGCGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 142313 | 0.66 | 0.466639 |
Target: 5'- aGCGCCGUaugggGGCCcGCgcgcucgcgGCGCC-CGCUu -3' miRNA: 3'- gCGCGGUA-----CCGGcCGa--------CGCGGcGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 14833 | 0.66 | 0.466639 |
Target: 5'- cCGCGcCCAUGGaCCGGguCUGgGCCGa-CUg -3' miRNA: 3'- -GCGC-GGUACC-GGCC--GACgCGGCgcGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 52472 | 0.66 | 0.466639 |
Target: 5'- gGCGCCGguaGGCCgccgugacGGCcucggGCGCCagcccgggGCGCUg -3' miRNA: 3'- gCGCGGUa--CCGG--------CCGa----CGCGG--------CGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 129691 | 0.66 | 0.466639 |
Target: 5'- gGcCGCCGUGGaCC-GCgGCGCCGaGCa -3' miRNA: 3'- gC-GCGGUACC-GGcCGaCGCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 64381 | 0.66 | 0.457833 |
Target: 5'- uCGagGCCGUGGCCaGCc-CGCgGCGCa -3' miRNA: 3'- -GCg-CGGUACCGGcCGacGCGgCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 138184 | 0.66 | 0.457833 |
Target: 5'- aCGUgGCCAUGGCgccCGuGCUGCGgcaccucgaCGCGCa -3' miRNA: 3'- -GCG-CGGUACCG---GC-CGACGCg--------GCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 15281 | 0.66 | 0.449116 |
Target: 5'- aGCGCCcc-GCUGcGCagcGCGCUGCGCg -3' miRNA: 3'- gCGCGGuacCGGC-CGa--CGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 28188 | 0.66 | 0.449116 |
Target: 5'- aGUGCCGUcGGCCGGgc-CGCCaCGCa -3' miRNA: 3'- gCGCGGUA-CCGGCCgacGCGGcGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 51796 | 0.66 | 0.449116 |
Target: 5'- cCGCuCCA-GGCUcaGGCccUGCGaCCGCGCg -3' miRNA: 3'- -GCGcGGUaCCGG--CCG--ACGC-GGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 62187 | 0.66 | 0.449116 |
Target: 5'- gGcCGCCcUGGCCGuguucacgcuGCUgGCGCUgGCGCUg -3' miRNA: 3'- gC-GCGGuACCGGC----------CGA-CGCGG-CGCGA- -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 63491 | 0.66 | 0.449116 |
Target: 5'- gGCGCCcgaagaagGUGGCCaGGUgGgGgCGCGCg -3' miRNA: 3'- gCGCGG--------UACCGG-CCGaCgCgGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 129147 | 0.66 | 0.449116 |
Target: 5'- aGCGCCGgcgcacacUGGCucuCGGCcaCGUCGCGCa -3' miRNA: 3'- gCGCGGU--------ACCG---GCCGacGCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 117234 | 0.66 | 0.449116 |
Target: 5'- aCGCGCgCGUccacgucggcgGGCCcgaGGCgcGgGCCGCGCg -3' miRNA: 3'- -GCGCG-GUA-----------CCGG---CCGa-CgCGGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 114140 | 0.66 | 0.449116 |
Target: 5'- cCGCcgaGCCGcGGCUcgGGCgcaGCGaCCGCGCg -3' miRNA: 3'- -GCG---CGGUaCCGG--CCGa--CGC-GGCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 59866 | 0.66 | 0.457833 |
Target: 5'- aGCuGCCGcagcaccgcUGGCUGGCgaagGCGUccaggCGCGCg -3' miRNA: 3'- gCG-CGGU---------ACCGGCCGa---CGCG-----GCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 89830 | 0.66 | 0.457833 |
Target: 5'- aGCGCgAUGcuGCCGGCguagGCGUgggUGUGCg -3' miRNA: 3'- gCGCGgUAC--CGGCCGa---CGCG---GCGCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 90341 | 0.66 | 0.457833 |
Target: 5'- gGCGCagCAUGGCCaugaGGCUGgcgaCGCCGaGCa -3' miRNA: 3'- gCGCG--GUACCGG----CCGAC----GCGGCgCGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 96389 | 0.66 | 0.457833 |
Target: 5'- gCGCGCgGUG-CCGGCgcacgGCGgCCGCcaccGCg -3' miRNA: 3'- -GCGCGgUACcGGCCGa----CGC-GGCG----CGa -5' |
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29602 | 3' | -65.7 | NC_006151.1 | + | 101100 | 0.66 | 0.457833 |
Target: 5'- gGgGCCcgGGUCgGGCgucucGUGCCuGCGCUc -3' miRNA: 3'- gCgCGGuaCCGG-CCGa----CGCGG-CGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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