miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 86722 0.74 0.422002
Target:  5'- uGGUCGCGGCGCGccgccGCGaGGCCGGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC-----CGC-CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 88193 0.68 0.746359
Target:  5'- -uGUCgGCGGCGUGGuCGGACCAgGCg-- -3'
miRNA:   3'- ucUAG-UGCUGCGCC-GCCUGGU-CGaag -5'
29602 5' -56.9 NC_006151.1 + 89479 0.72 0.52491
Target:  5'- -cGUCACGuGCGCGGCGGcgaGCCGGUa-- -3'
miRNA:   3'- ucUAGUGC-UGCGCCGCC---UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 90232 0.82 0.152865
Target:  5'- gAGAUCGCGuCGCGGCuGGCCAGCg-- -3'
miRNA:   3'- -UCUAGUGCuGCGCCGcCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 90665 0.73 0.486207
Target:  5'- ---gCGCGGgGCGGCGGGCC-GCUUg -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUGGuCGAAg -5'
29602 5' -56.9 NC_006151.1 + 90736 0.66 0.851871
Target:  5'- cGGUgGCGGCggcgcccucggggGCGGCGGGCaCGGUggCg -3'
miRNA:   3'- uCUAgUGCUG-------------CGCCGCCUG-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 91731 0.67 0.793278
Target:  5'- cGAacaGCGAcauCGCGGCGGGCgAGCg-- -3'
miRNA:   3'- uCUag-UGCU---GCGCCGCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 95296 0.69 0.70697
Target:  5'- ----gGCGACGCGcGCGGcCCGGCg-- -3'
miRNA:   3'- ucuagUGCUGCGC-CGCCuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 95426 0.66 0.87526
Target:  5'- cAGAggUugGACGUGGCGaGGgCGGCg-- -3'
miRNA:   3'- -UCUa-GugCUGCGCCGC-CUgGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 96213 0.66 0.83658
Target:  5'- -cGUCGcCGugGCGGCGGcCgCGGCg-- -3'
miRNA:   3'- ucUAGU-GCugCGCCGCCuG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 96809 0.66 0.87526
Target:  5'- gGGcgCGCGGgcuuuuaGCGGCGGGCCcGCc-- -3'
miRNA:   3'- -UCuaGUGCUg------CGCCGCCUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 96905 0.67 0.814581
Target:  5'- -uGUCugGGCGgGGCGGgacaagccgggacggGCCGGgaUCg -3'
miRNA:   3'- ucUAGugCUGCgCCGCC---------------UGGUCgaAG- -5'
29602 5' -56.9 NC_006151.1 + 97359 0.74 0.439835
Target:  5'- aAGGcCGCGGCgGCGGCGGGCgCGGCg-- -3'
miRNA:   3'- -UCUaGUGCUG-CGCCGCCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 98210 0.67 0.82826
Target:  5'- gGGGUCGaguGCGCGGCGGcGCCcGCg-- -3'
miRNA:   3'- -UCUAGUgc-UGCGCCGCC-UGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 100799 0.66 0.860398
Target:  5'- ---cCACGAgGUGGCGGGCgaCGGCg-- -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG--GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 101383 0.68 0.762649
Target:  5'- cAGAUCACGGCGCgcgccuucuucgacGGCcucuGGGCgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCUGCG--------------CCG----CCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 102400 0.68 0.774884
Target:  5'- uGGUCGCGGCGCGcgucGCGcGGCCcGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC----CGC-CUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 103951 0.74 0.422002
Target:  5'- aAGAUgGCGcuCGCGGCGcGCCAGCgcgUCg -3'
miRNA:   3'- -UCUAgUGCu-GCGCCGCcUGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 104130 0.68 0.755979
Target:  5'- ---gCGCGACGUGGCGGccgACCgcGGCUa- -3'
miRNA:   3'- ucuaGUGCUGCGCCGCC---UGG--UCGAag -5'
29602 5' -56.9 NC_006151.1 + 104263 0.66 0.844714
Target:  5'- gAGAaCGcCGGCGCGGCGG-CgGGCc-- -3'
miRNA:   3'- -UCUaGU-GCUGCGCCGCCuGgUCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.