miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 67741 0.71 0.574811
Target:  5'- cAGG-CACGGCGCGGCggccccgucggGGugCGGCgUCg -3'
miRNA:   3'- -UCUaGUGCUGCGCCG-----------CCugGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 67972 0.71 0.615495
Target:  5'- aGGAcCACGcaguCGCGGCGGcccGCCGGCg-- -3'
miRNA:   3'- -UCUaGUGCu---GCGCCGCC---UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 68028 0.68 0.754064
Target:  5'- cAGGUCcaggcggcccgcCGGCGCGGCGGGCacgGGCUc- -3'
miRNA:   3'- -UCUAGu-----------GCUGCGCCGCCUGg--UCGAag -5'
29602 5' -56.9 NC_006151.1 + 68273 0.68 0.755979
Target:  5'- cGGUCGCGGCGCcgggcgccacGGCGG-CCAgGCg-- -3'
miRNA:   3'- uCUAGUGCUGCG----------CCGCCuGGU-CGaag -5'
29602 5' -56.9 NC_006151.1 + 68465 0.68 0.765491
Target:  5'- gGGGUcCACcaGCGCGGCGGGCCA-CUcCa -3'
miRNA:   3'- -UCUA-GUGc-UGCGCCGCCUGGUcGAaG- -5'
29602 5' -56.9 NC_006151.1 + 69831 0.69 0.70697
Target:  5'- ---cCACGuuguaGCGCGuGCGGGCCGGCa-- -3'
miRNA:   3'- ucuaGUGC-----UGCGC-CGCCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 71768 0.71 0.614474
Target:  5'- uGGUCcuGCGGCaGCGGCGGcgggggcugccgcACCAGCUg- -3'
miRNA:   3'- uCUAG--UGCUG-CGCCGCC-------------UGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 71837 0.67 0.817179
Target:  5'- uGGAUCACGGCGuUGGCGuaccguccugcgcccCCAGCgUCa -3'
miRNA:   3'- -UCUAGUGCUGC-GCCGCcu-------------GGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 71972 0.69 0.696941
Target:  5'- -uGUCGCGGUGCGGCGgGGgCAGCUg- -3'
miRNA:   3'- ucUAGUGCUGCGCCGC-CUgGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 72253 0.66 0.860398
Target:  5'- ---cCGCGGCcgccgacgccgaGCGGCGuGGCCAGCa-- -3'
miRNA:   3'- ucuaGUGCUG------------CGCCGC-CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 75127 0.66 0.87526
Target:  5'- uGGUCgGCGGCcgGCGGCGcGGcCCAGCg-- -3'
miRNA:   3'- uCUAG-UGCUG--CGCCGC-CU-GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 75454 0.67 0.82826
Target:  5'- uGGcgCGCGuaGCGguCGGCGG-CCGGCUUg -3'
miRNA:   3'- -UCuaGUGC--UGC--GCCGCCuGGUCGAAg -5'
29602 5' -56.9 NC_006151.1 + 75994 0.68 0.774884
Target:  5'- -cGUCGCGcACGCGGCGcuUCAGCUcCg -3'
miRNA:   3'- ucUAGUGC-UGCGCCGCcuGGUCGAaG- -5'
29602 5' -56.9 NC_006151.1 + 78172 0.67 0.792372
Target:  5'- uGGUCGaggccguguccgcCGuCGCGGCGGACCc-CUUCu -3'
miRNA:   3'- uCUAGU-------------GCuGCGCCGCCUGGucGAAG- -5'
29602 5' -56.9 NC_006151.1 + 79786 0.69 0.676731
Target:  5'- cGGAUCGCGgccucgGCGCGGCacACCGGCa-- -3'
miRNA:   3'- -UCUAGUGC------UGCGCCGccUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 80264 0.69 0.716935
Target:  5'- gAGAggGCGACGaggguaCGGCGGACacauccgcggaGGCUUCg -3'
miRNA:   3'- -UCUagUGCUGC------GCCGCCUGg----------UCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 81431 0.68 0.736639
Target:  5'- gAGGUCGCGGCGCaGCGaGAC-GGCg-- -3'
miRNA:   3'- -UCUAGUGCUGCGcCGC-CUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 84378 0.76 0.310278
Target:  5'- cGAUCGCGGCGCGcGgGGACgGGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC-CgCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 84749 0.67 0.827418
Target:  5'- gAGGagACGGCGCgcgccgccgaggaGGCGGACgCGGCg-- -3'
miRNA:   3'- -UCUagUGCUGCG-------------CCGCCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 85964 0.66 0.83658
Target:  5'- ---gCGCaACGCGGCGGACaAGCgccUCg -3'
miRNA:   3'- ucuaGUGcUGCGCCGCCUGgUCGa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.