miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 36504 0.66 0.855777
Target:  5'- cGGUCggugagcccgggccgGCGGCGCGGCcucGGACCccGGCg-- -3'
miRNA:   3'- uCUAG---------------UGCUGCGCCG---CCUGG--UCGaag -5'
29602 5' -56.9 NC_006151.1 + 39346 0.7 0.635941
Target:  5'- cGG-CGCGGCGCGGC--GCCGGCUcaUCg -3'
miRNA:   3'- uCUaGUGCUGCGCCGccUGGUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 40126 0.68 0.736639
Target:  5'- gAGAUCGuCGGCguccGCGGCGGcgacgGCCGGCc-- -3'
miRNA:   3'- -UCUAGU-GCUG----CGCCGCC-----UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 40545 0.66 0.860398
Target:  5'- gAGGUgGCGGCgGUGGUGGAagCGGCggCg -3'
miRNA:   3'- -UCUAgUGCUG-CGCCGCCUg-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 46634 0.7 0.635941
Target:  5'- ----uGCGACGCGGcCGGACgGGCg-- -3'
miRNA:   3'- ucuagUGCUGCGCC-GCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 49836 0.69 0.716935
Target:  5'- cGAcgACGGCgGCGGCGGGCCcGCg-- -3'
miRNA:   3'- uCUagUGCUG-CGCCGCCUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 50471 0.67 0.82826
Target:  5'- --cUCGCGccaGCGCGGCGcGACCgAGCc-- -3'
miRNA:   3'- ucuAGUGC---UGCGCCGC-CUGG-UCGaag -5'
29602 5' -56.9 NC_006151.1 + 51382 0.75 0.363173
Target:  5'- uGGAUCGUGACGCGGCccgGGGCgAGCgcgUCg -3'
miRNA:   3'- -UCUAGUGCUGCGCCG---CCUGgUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 51949 0.71 0.615495
Target:  5'- uGGUCGCGcagcaccacGCGCGGCGuGuCCAGCg-- -3'
miRNA:   3'- uCUAGUGC---------UGCGCCGC-CuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 54063 0.66 0.83658
Target:  5'- uGGcgUugGugGCGcGCGGACCcucuGCggCg -3'
miRNA:   3'- -UCuaGugCugCGC-CGCCUGGu---CGaaG- -5'
29602 5' -56.9 NC_006151.1 + 54822 0.67 0.811093
Target:  5'- uGGcgCGCGACGCGcucaCGGGCgAGCg-- -3'
miRNA:   3'- -UCuaGUGCUGCGCc---GCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 55873 0.78 0.245213
Target:  5'- gAGAUCGCGGCgcugucGCGGCGGACguGCg-- -3'
miRNA:   3'- -UCUAGUGCUG------CGCCGCCUGguCGaag -5'
29602 5' -56.9 NC_006151.1 + 57512 0.66 0.83658
Target:  5'- cGGcCGCGGCgGCGGCGGccgccuCCGGCg-- -3'
miRNA:   3'- uCUaGUGCUG-CGCCGCCu-----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 58497 0.71 0.574811
Target:  5'- uGGAUgAUGccCGCGcGCGGGCCGGCcUCg -3'
miRNA:   3'- -UCUAgUGCu-GCGC-CGCCUGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 61761 0.67 0.801371
Target:  5'- cGGUCGCGGgggccguggugcUGCGGCGcgaggccGGCCGGCUg- -3'
miRNA:   3'- uCUAGUGCU------------GCGCCGC-------CUGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 63271 0.68 0.784149
Target:  5'- -cGUCACGACGCGGUugcuGGAgaaUCGGCa-- -3'
miRNA:   3'- ucUAGUGCUGCGCCG----CCU---GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 63413 0.7 0.666567
Target:  5'- cGggCACGGCGCaGGCGGG-CGGCacgUCg -3'
miRNA:   3'- uCuaGUGCUGCG-CCGCCUgGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 64027 0.7 0.635941
Target:  5'- cGAUCGCGuCGCGaucGCaGACCAGCa-- -3'
miRNA:   3'- uCUAGUGCuGCGC---CGcCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 64239 0.69 0.686859
Target:  5'- aGGGcCGCGACgGCGGCgcGGGCCAcGCUcUCg -3'
miRNA:   3'- -UCUaGUGCUG-CGCCG--CCUGGU-CGA-AG- -5'
29602 5' -56.9 NC_006151.1 + 66345 0.67 0.793278
Target:  5'- cGA-CGCGACGCGGCgcuacuacgcGGACCucaAGCg-- -3'
miRNA:   3'- uCUaGUGCUGCGCCG----------CCUGG---UCGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.