miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 120718 0.66 0.872356
Target:  5'- gGGAUCACGAUGCagucgaagcgcccGCGGGacCCGGCcgcgUCa -3'
miRNA:   3'- -UCUAGUGCUGCGc------------CGCCU--GGUCGa---AG- -5'
29602 5' -56.9 NC_006151.1 + 129929 0.66 0.867935
Target:  5'- gAGAgCGCGAUGCugcccaGCGGcACCAGCg-- -3'
miRNA:   3'- -UCUaGUGCUGCGc-----CGCC-UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 11061 0.66 0.867935
Target:  5'- uGGA-CGCGGgccacacugUGCGGCGGACCGuGCc-- -3'
miRNA:   3'- -UCUaGUGCU---------GCGCCGCCUGGU-CGaag -5'
29602 5' -56.9 NC_006151.1 + 28782 0.66 0.867935
Target:  5'- cGAgu-CGGCGgGGCGGuCCGGCc-- -3'
miRNA:   3'- uCUaguGCUGCgCCGCCuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 137605 0.66 0.860398
Target:  5'- gGGAUCgGgGGCGCgGGCGGGgaccCCGGCg-- -3'
miRNA:   3'- -UCUAG-UgCUGCG-CCGCCU----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 127828 0.66 0.860398
Target:  5'- cGGuUCACGuACGUGGCGGcguCgCGGCUg- -3'
miRNA:   3'- -UCuAGUGC-UGCGCCGCCu--G-GUCGAag -5'
29602 5' -56.9 NC_006151.1 + 72253 0.66 0.860398
Target:  5'- ---cCGCGGCcgccgacgccgaGCGGCGuGGCCAGCa-- -3'
miRNA:   3'- ucuaGUGCUG------------CGCCGC-CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 71837 0.67 0.817179
Target:  5'- uGGAUCACGGCGuUGGCGuaccguccugcgcccCCAGCgUCa -3'
miRNA:   3'- -UCUAGUGCUGC-GCCGCcu-------------GGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 96905 0.67 0.814581
Target:  5'- -uGUCugGGCGgGGCGGgacaagccgggacggGCCGGgaUCg -3'
miRNA:   3'- ucUAGugCUGCgCCGCC---------------UGGUCgaAG- -5'
29602 5' -56.9 NC_006151.1 + 126278 0.67 0.811093
Target:  5'- cGAagGCGACGUGGaCGaGGCCAaGCUg- -3'
miRNA:   3'- uCUagUGCUGCGCC-GC-CUGGU-CGAag -5'
29602 5' -56.9 NC_006151.1 + 118159 0.67 0.811093
Target:  5'- cGGUgGCGccgcugguGCGCGGCcugaccgucGaGGCCGGCUUCg -3'
miRNA:   3'- uCUAgUGC--------UGCGCCG---------C-CUGGUCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 54822 0.67 0.811093
Target:  5'- uGGcgCGCGACGCGcucaCGGGCgAGCg-- -3'
miRNA:   3'- -UCuaGUGCUGCGCc---GCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 113443 0.67 0.819762
Target:  5'- --uUC-CGGCGCGGCGuGCuCAGCUacUCg -3'
miRNA:   3'- ucuAGuGCUGCGCCGCcUG-GUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 132116 0.67 0.819762
Target:  5'- cGcgCACGA-GCGGCaGGcCCAGCUc- -3'
miRNA:   3'- uCuaGUGCUgCGCCG-CCuGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 14565 0.67 0.819762
Target:  5'- ---cCACaggGACGCGaGCgGGACCGGCUggUCg -3'
miRNA:   3'- ucuaGUG---CUGCGC-CG-CCUGGUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 136833 0.67 0.819762
Target:  5'- cGGGcUCuGCGACGCGGCc-GCCGGCcUCg -3'
miRNA:   3'- -UCU-AG-UGCUGCGCCGccUGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 84749 0.67 0.827418
Target:  5'- gAGGagACGGCGCgcgccgccgaggaGGCGGACgCGGCg-- -3'
miRNA:   3'- -UCUagUGCUGCG-------------CCGCCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 50471 0.67 0.82826
Target:  5'- --cUCGCGccaGCGCGGCGcGACCgAGCc-- -3'
miRNA:   3'- ucuAGUGC---UGCGCCGC-CUGG-UCGaag -5'
29602 5' -56.9 NC_006151.1 + 75454 0.67 0.82826
Target:  5'- uGGcgCGCGuaGCGguCGGCGG-CCGGCUUg -3'
miRNA:   3'- -UCuaGUGC--UGC--GCCGCCuGGUCGAAg -5'
29602 5' -56.9 NC_006151.1 + 122163 0.67 0.80846
Target:  5'- cGcgCACGAUcgGCGGCGGGCUcguggugccgccggAGCUg- -3'
miRNA:   3'- uCuaGUGCUG--CGCCGCCUGG--------------UCGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.