miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 50471 0.67 0.82826
Target:  5'- --cUCGCGccaGCGCGGCGcGACCgAGCc-- -3'
miRNA:   3'- ucuAGUGC---UGCGCCGC-CUGG-UCGaag -5'
29602 5' -56.9 NC_006151.1 + 84749 0.67 0.827418
Target:  5'- gAGGagACGGCGCgcgccgccgaggaGGCGGACgCGGCg-- -3'
miRNA:   3'- -UCUagUGCUGCG-------------CCGCCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 136833 0.67 0.819762
Target:  5'- cGGGcUCuGCGACGCGGCc-GCCGGCcUCg -3'
miRNA:   3'- -UCU-AG-UGCUGCGCCGccUGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 14565 0.67 0.819762
Target:  5'- ---cCACaggGACGCGaGCgGGACCGGCUggUCg -3'
miRNA:   3'- ucuaGUG---CUGCGC-CG-CCUGGUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 132116 0.67 0.819762
Target:  5'- cGcgCACGA-GCGGCaGGcCCAGCUc- -3'
miRNA:   3'- uCuaGUGCUgCGCCG-CCuGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 113443 0.67 0.819762
Target:  5'- --uUC-CGGCGCGGCGuGCuCAGCUacUCg -3'
miRNA:   3'- ucuAGuGCUGCGCCGCcUG-GUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 71837 0.67 0.817179
Target:  5'- uGGAUCACGGCGuUGGCGuaccguccugcgcccCCAGCgUCa -3'
miRNA:   3'- -UCUAGUGCUGC-GCCGCcu-------------GGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 29585 0.68 0.764545
Target:  5'- cGGAUCGCGGCggcugcggccgcgGCGGCGGG--GGCUg- -3'
miRNA:   3'- -UCUAGUGCUG-------------CGCCGCCUggUCGAag -5'
29602 5' -56.9 NC_006151.1 + 133626 0.68 0.764545
Target:  5'- gGGGUCGCGGCggccgggGCGGUGGuCCGGgUg- -3'
miRNA:   3'- -UCUAGUGCUG-------CGCCGCCuGGUCgAag -5'
29602 5' -56.9 NC_006151.1 + 101383 0.68 0.762649
Target:  5'- cAGAUCACGGCGCgcgccuucuucgacGGCcucuGGGCgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCUGCG--------------CCG----CCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 68273 0.68 0.755979
Target:  5'- cGGUCGCGGCGCcgggcgccacGGCGG-CCAgGCg-- -3'
miRNA:   3'- uCUAGUGCUGCG----------CCGCCuGGU-CGaag -5'
29602 5' -56.9 NC_006151.1 + 104130 0.68 0.755979
Target:  5'- ---gCGCGACGUGGCGGccgACCgcGGCUa- -3'
miRNA:   3'- ucuaGUGCUGCGCCGCC---UGG--UCGAag -5'
29602 5' -56.9 NC_006151.1 + 68465 0.68 0.765491
Target:  5'- gGGGUcCACcaGCGCGGCGGGCCA-CUcCa -3'
miRNA:   3'- -UCUA-GUGc-UGCGCCGCCUGGUcGAaG- -5'
29602 5' -56.9 NC_006151.1 + 102400 0.68 0.774884
Target:  5'- uGGUCGCGGCGCGcgucGCGcGGCCcGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC----CGC-CUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 104894 0.68 0.774884
Target:  5'- ---gCGCGAgGUGGUGGACgCGGCggCg -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 130372 0.68 0.774884
Target:  5'- cGcgCGCGcCGCGGCGuccagcgcgaaGGCCAGCgccUCg -3'
miRNA:   3'- uCuaGUGCuGCGCCGC-----------CUGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 75994 0.68 0.774884
Target:  5'- -cGUCGCGcACGCGGCGcuUCAGCUcCg -3'
miRNA:   3'- ucUAGUGC-UGCGCCGCcuGGUCGAaG- -5'
29602 5' -56.9 NC_006151.1 + 18683 0.68 0.784149
Target:  5'- cGGGUucCACGggcGCGCgGGCGGcGCCGGCgUCg -3'
miRNA:   3'- -UCUA--GUGC---UGCG-CCGCC-UGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 63271 0.68 0.784149
Target:  5'- -cGUCACGACGCGGUugcuGGAgaaUCGGCa-- -3'
miRNA:   3'- ucUAGUGCUGCGCCG----CCU---GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 17819 0.68 0.755979
Target:  5'- ---cCugGGCGCGGCGGgGCgGGCg-- -3'
miRNA:   3'- ucuaGugCUGCGCCGCC-UGgUCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.