miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 67741 0.71 0.574811
Target:  5'- cAGG-CACGGCGCGGCggccccgucggGGugCGGCgUCg -3'
miRNA:   3'- -UCUaGUGCUGCGCCG-----------CCugGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 58497 0.71 0.574811
Target:  5'- uGGAUgAUGccCGCGcGCGGGCCGGCcUCg -3'
miRNA:   3'- -UCUAgUGCu-GCGC-CGCCUGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 17924 0.71 0.584938
Target:  5'- uGAUCGCGACgcccaucaggcaGCGGCGGcgucuCCGGCg-- -3'
miRNA:   3'- uCUAGUGCUG------------CGCCGCCu----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 17400 0.71 0.595099
Target:  5'- cGGggCGCGuggcGCGCGGCagcaGGGCCAGCg-- -3'
miRNA:   3'- -UCuaGUGC----UGCGCCG----CCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 71768 0.71 0.614474
Target:  5'- uGGUCcuGCGGCaGCGGCGGcgggggcugccgcACCAGCUg- -3'
miRNA:   3'- uCUAG--UGCUG-CGCCGCC-------------UGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 67972 0.71 0.615495
Target:  5'- aGGAcCACGcaguCGCGGCGGcccGCCGGCg-- -3'
miRNA:   3'- -UCUaGUGCu---GCGCCGCC---UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 51949 0.71 0.615495
Target:  5'- uGGUCGCGcagcaccacGCGCGGCGuGuCCAGCg-- -3'
miRNA:   3'- uCUAGUGC---------UGCGCCGC-CuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 118881 0.7 0.625716
Target:  5'- ----gGCGGCGCGGCGGcgacgcggccGCCGGCg-- -3'
miRNA:   3'- ucuagUGCUGCGCCGCC----------UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 39346 0.7 0.635941
Target:  5'- cGG-CGCGGCGCGGC--GCCGGCUcaUCg -3'
miRNA:   3'- uCUaGUGCUGCGCCGccUGGUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 64027 0.7 0.635941
Target:  5'- cGAUCGCGuCGCGaucGCaGACCAGCa-- -3'
miRNA:   3'- uCUAGUGCuGCGC---CGcCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 46634 0.7 0.635941
Target:  5'- ----uGCGACGCGGcCGGACgGGCg-- -3'
miRNA:   3'- ucuagUGCUGCGCC-GCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 21501 0.7 0.645142
Target:  5'- gGGggCGCGGgcgucacCGgGGCGGGCUcgGGCUUCg -3'
miRNA:   3'- -UCuaGUGCU-------GCgCCGCCUGG--UCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 111662 0.7 0.656375
Target:  5'- uGAUCGCGgccagggggGCGuCGGCGGGCCGGa--- -3'
miRNA:   3'- uCUAGUGC---------UGC-GCCGCCUGGUCgaag -5'
29602 5' -56.9 NC_006151.1 + 106342 0.7 0.656375
Target:  5'- cGcgCugGACGCGGUGGACaC-GCUg- -3'
miRNA:   3'- uCuaGugCUGCGCCGCCUG-GuCGAag -5'
29602 5' -56.9 NC_006151.1 + 63413 0.7 0.666567
Target:  5'- cGggCACGGCGCaGGCGGG-CGGCacgUCg -3'
miRNA:   3'- uCuaGUGCUGCG-CCGCCUgGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 141632 0.7 0.666567
Target:  5'- cGGGUCgcugccgcgGCGGCGCGGCGgGGCCccgcgGGCUc- -3'
miRNA:   3'- -UCUAG---------UGCUGCGCCGC-CUGG-----UCGAag -5'
29602 5' -56.9 NC_006151.1 + 5079 0.69 0.676731
Target:  5'- aGGGcCGCGGggcCGCGGCGGgcGCCGGCg-- -3'
miRNA:   3'- -UCUaGUGCU---GCGCCGCC--UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 79786 0.69 0.676731
Target:  5'- cGGAUCGCGgccucgGCGCGGCacACCGGCa-- -3'
miRNA:   3'- -UCUAGUGC------UGCGCCGccUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 137128 0.69 0.686859
Target:  5'- cGcgCgACGGCGCGGCGcGACgCGGCg-- -3'
miRNA:   3'- uCuaG-UGCUGCGCCGC-CUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 64239 0.69 0.686859
Target:  5'- aGGGcCGCGACgGCGGCgcGGGCCAcGCUcUCg -3'
miRNA:   3'- -UCUaGUGCUG-CGCCG--CCUGGU-CGA-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.