miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 104263 0.66 0.844714
Target:  5'- gAGAaCGcCGGCGCGGCGG-CgGGCc-- -3'
miRNA:   3'- -UCUaGU-GCUGCGCCGCCuGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 131768 0.66 0.844714
Target:  5'- cGGUCGCGAcCGCGGCcgcGGGCgCcGCcgUCg -3'
miRNA:   3'- uCUAGUGCU-GCGCCG---CCUG-GuCGa-AG- -5'
29602 5' -56.9 NC_006151.1 + 128616 0.66 0.83658
Target:  5'- ---cCGCGGCGUgcgccccagguGGCGGACCAcGCgcgcgUCg -3'
miRNA:   3'- ucuaGUGCUGCG-----------CCGCCUGGU-CGa----AG- -5'
29602 5' -56.9 NC_006151.1 + 96213 0.66 0.83658
Target:  5'- -cGUCGcCGugGCGGCGGcCgCGGCg-- -3'
miRNA:   3'- ucUAGU-GCugCGCCGCCuG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 85964 0.66 0.83658
Target:  5'- ---gCGCaACGCGGCGGACaAGCgccUCg -3'
miRNA:   3'- ucuaGUGcUGCGCCGCCUGgUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 57512 0.66 0.83658
Target:  5'- cGGcCGCGGCgGCGGCGGccgccuCCGGCg-- -3'
miRNA:   3'- uCUaGUGCUG-CGCCGCCu-----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 54063 0.66 0.83658
Target:  5'- uGGcgUugGugGCGcGCGGACCcucuGCggCg -3'
miRNA:   3'- -UCuaGugCugCGC-CGCCUGGu---CGaaG- -5'
29602 5' -56.9 NC_006151.1 + 50471 0.67 0.82826
Target:  5'- --cUCGCGccaGCGCGGCGcGACCgAGCc-- -3'
miRNA:   3'- ucuAGUGC---UGCGCCGC-CUGG-UCGaag -5'
29602 5' -56.9 NC_006151.1 + 75454 0.67 0.82826
Target:  5'- uGGcgCGCGuaGCGguCGGCGG-CCGGCUUg -3'
miRNA:   3'- -UCuaGUGC--UGC--GCCGCCuGGUCGAAg -5'
29602 5' -56.9 NC_006151.1 + 98210 0.67 0.82826
Target:  5'- gGGGUCGaguGCGCGGCGGcGCCcGCg-- -3'
miRNA:   3'- -UCUAGUgc-UGCGCCGCC-UGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 84749 0.67 0.827418
Target:  5'- gAGGagACGGCGCgcgccgccgaggaGGCGGACgCGGCg-- -3'
miRNA:   3'- -UCUagUGCUGCG-------------CCGCCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 113443 0.67 0.819762
Target:  5'- --uUC-CGGCGCGGCGuGCuCAGCUacUCg -3'
miRNA:   3'- ucuAGuGCUGCGCCGCcUG-GUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 132116 0.67 0.819762
Target:  5'- cGcgCACGA-GCGGCaGGcCCAGCUc- -3'
miRNA:   3'- uCuaGUGCUgCGCCG-CCuGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 14565 0.67 0.819762
Target:  5'- ---cCACaggGACGCGaGCgGGACCGGCUggUCg -3'
miRNA:   3'- ucuaGUG---CUGCGC-CG-CCUGGUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 136833 0.67 0.819762
Target:  5'- cGGGcUCuGCGACGCGGCc-GCCGGCcUCg -3'
miRNA:   3'- -UCU-AG-UGCUGCGCCGccUGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 71837 0.67 0.817179
Target:  5'- uGGAUCACGGCGuUGGCGuaccguccugcgcccCCAGCgUCa -3'
miRNA:   3'- -UCUAGUGCUGC-GCCGCcu-------------GGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 96905 0.67 0.814581
Target:  5'- -uGUCugGGCGgGGCGGgacaagccgggacggGCCGGgaUCg -3'
miRNA:   3'- ucUAGugCUGCgCCGCC---------------UGGUCgaAG- -5'
29602 5' -56.9 NC_006151.1 + 126278 0.67 0.811093
Target:  5'- cGAagGCGACGUGGaCGaGGCCAaGCUg- -3'
miRNA:   3'- uCUagUGCUGCGCC-GC-CUGGU-CGAag -5'
29602 5' -56.9 NC_006151.1 + 118159 0.67 0.811093
Target:  5'- cGGUgGCGccgcugguGCGCGGCcugaccgucGaGGCCGGCUUCg -3'
miRNA:   3'- uCUAgUGC--------UGCGCCG---------C-CUGGUCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 54822 0.67 0.811093
Target:  5'- uGGcgCGCGACGCGcucaCGGGCgAGCg-- -3'
miRNA:   3'- -UCuaGUGCUGCGCc---GCCUGgUCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.