miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 122163 0.67 0.80846
Target:  5'- cGcgCACGAUcgGCGGCGGGCUcguggugccgccggAGCUg- -3'
miRNA:   3'- uCuaGUGCUG--CGCCGCCUGG--------------UCGAag -5'
29602 5' -56.9 NC_006151.1 + 61761 0.67 0.801371
Target:  5'- cGGUCGCGGgggccguggugcUGCGGCGcgaggccGGCCGGCUg- -3'
miRNA:   3'- uCUAGUGCU------------GCGCCGC-------CUGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 91731 0.67 0.793278
Target:  5'- cGAacaGCGAcauCGCGGCGGGCgAGCg-- -3'
miRNA:   3'- uCUag-UGCU---GCGCCGCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 66345 0.67 0.793278
Target:  5'- cGA-CGCGACGCGGCgcuacuacgcGGACCucaAGCg-- -3'
miRNA:   3'- uCUaGUGCUGCGCCG----------CCUGG---UCGaag -5'
29602 5' -56.9 NC_006151.1 + 26346 0.67 0.793278
Target:  5'- --cUCACGggGCgGCGGCGGGCC-GCgUCg -3'
miRNA:   3'- ucuAGUGC--UG-CGCCGCCUGGuCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 4155 0.67 0.793278
Target:  5'- gGGAUCGCGuCGCGgaGCGcGAgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCuGCGC--CGC-CUgGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 78172 0.67 0.792372
Target:  5'- uGGUCGaggccguguccgcCGuCGCGGCGGACCc-CUUCu -3'
miRNA:   3'- uCUAGU-------------GCuGCGCCGCCUGGucGAAG- -5'
29602 5' -56.9 NC_006151.1 + 132376 0.68 0.787818
Target:  5'- aGGcgCGCGACGUcGCGGuaguagcgcccgcgcACCAGCUg- -3'
miRNA:   3'- -UCuaGUGCUGCGcCGCC---------------UGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 63271 0.68 0.784149
Target:  5'- -cGUCACGACGCGGUugcuGGAgaaUCGGCa-- -3'
miRNA:   3'- ucUAGUGCUGCGCCG----CCU---GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 18683 0.68 0.784149
Target:  5'- cGGGUucCACGggcGCGCgGGCGGcGCCGGCgUCg -3'
miRNA:   3'- -UCUA--GUGC---UGCG-CCGCC-UGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 75994 0.68 0.774884
Target:  5'- -cGUCGCGcACGCGGCGcuUCAGCUcCg -3'
miRNA:   3'- ucUAGUGC-UGCGCCGCcuGGUCGAaG- -5'
29602 5' -56.9 NC_006151.1 + 130372 0.68 0.774884
Target:  5'- cGcgCGCGcCGCGGCGuccagcgcgaaGGCCAGCgccUCg -3'
miRNA:   3'- uCuaGUGCuGCGCCGC-----------CUGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 104894 0.68 0.774884
Target:  5'- ---gCGCGAgGUGGUGGACgCGGCggCg -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 102400 0.68 0.774884
Target:  5'- uGGUCGCGGCGCGcgucGCGcGGCCcGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC----CGC-CUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 68465 0.68 0.765491
Target:  5'- gGGGUcCACcaGCGCGGCGGGCCA-CUcCa -3'
miRNA:   3'- -UCUA-GUGc-UGCGCCGCCUGGUcGAaG- -5'
29602 5' -56.9 NC_006151.1 + 29585 0.68 0.764545
Target:  5'- cGGAUCGCGGCggcugcggccgcgGCGGCGGG--GGCUg- -3'
miRNA:   3'- -UCUAGUGCUG-------------CGCCGCCUggUCGAag -5'
29602 5' -56.9 NC_006151.1 + 133626 0.68 0.764545
Target:  5'- gGGGUCGCGGCggccgggGCGGUGGuCCGGgUg- -3'
miRNA:   3'- -UCUAGUGCUG-------CGCCGCCuGGUCgAag -5'
29602 5' -56.9 NC_006151.1 + 101383 0.68 0.762649
Target:  5'- cAGAUCACGGCGCgcgccuucuucgacGGCcucuGGGCgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCUGCG--------------CCG----CCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 104130 0.68 0.755979
Target:  5'- ---gCGCGACGUGGCGGccgACCgcGGCUa- -3'
miRNA:   3'- ucuaGUGCUGCGCCGCC---UGG--UCGAag -5'
29602 5' -56.9 NC_006151.1 + 17819 0.68 0.755979
Target:  5'- ---cCugGGCGCGGCGGgGCgGGCg-- -3'
miRNA:   3'- ucuaGugCUGCGCCGCC-UGgUCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.