miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 17819 0.68 0.755979
Target:  5'- ---cCugGGCGCGGCGGgGCgGGCg-- -3'
miRNA:   3'- ucuaGugCUGCGCCGCC-UGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 68028 0.68 0.754064
Target:  5'- cAGGUCcaggcggcccgcCGGCGCGGCGGGCacgGGCUc- -3'
miRNA:   3'- -UCUAGu-----------GCUGCGCCGCCUGg--UCGAag -5'
29602 5' -56.9 NC_006151.1 + 88193 0.68 0.746359
Target:  5'- -uGUCgGCGGCGUGGuCGGACCAgGCg-- -3'
miRNA:   3'- ucUAG-UGCUGCGCC-GCCUGGU-CGaag -5'
29602 5' -56.9 NC_006151.1 + 81431 0.68 0.736639
Target:  5'- gAGGUCGCGGCGCaGCGaGAC-GGCg-- -3'
miRNA:   3'- -UCUAGUGCUGCGcCGC-CUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 40126 0.68 0.736639
Target:  5'- gAGAUCGuCGGCguccGCGGCGGcgacgGCCGGCc-- -3'
miRNA:   3'- -UCUAGU-GCUG----CGCCGCC-----UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 104842 0.69 0.726827
Target:  5'- ---cCGCGGCGgaGGCGGACCAGg--- -3'
miRNA:   3'- ucuaGUGCUGCg-CCGCCUGGUCgaag -5'
29602 5' -56.9 NC_006151.1 + 10699 0.69 0.726827
Target:  5'- uGAUCACGuuCGCGcaccGCGGcGCCAGCa-- -3'
miRNA:   3'- uCUAGUGCu-GCGC----CGCC-UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 49836 0.69 0.716935
Target:  5'- cGAcgACGGCgGCGGCGGGCCcGCg-- -3'
miRNA:   3'- uCUagUGCUG-CGCCGCCUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 123213 0.69 0.716935
Target:  5'- ---gUACGugGCGGUGGccGCCGGgUUCc -3'
miRNA:   3'- ucuaGUGCugCGCCGCC--UGGUCgAAG- -5'
29602 5' -56.9 NC_006151.1 + 80264 0.69 0.716935
Target:  5'- gAGAggGCGACGaggguaCGGCGGACacauccgcggaGGCUUCg -3'
miRNA:   3'- -UCUagUGCUGC------GCCGCCUGg----------UCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 69831 0.69 0.70697
Target:  5'- ---cCACGuuguaGCGCGuGCGGGCCGGCa-- -3'
miRNA:   3'- ucuaGUGC-----UGCGC-CGCCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 95296 0.69 0.70697
Target:  5'- ----gGCGACGCGcGCGGcCCGGCg-- -3'
miRNA:   3'- ucuagUGCUGCGC-CGCCuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 132044 0.69 0.70697
Target:  5'- cGGcgCGCGgcaGCGCGGCGGAgaaCGGCg-- -3'
miRNA:   3'- -UCuaGUGC---UGCGCCGCCUg--GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 71972 0.69 0.696941
Target:  5'- -uGUCGCGGUGCGGCGgGGgCAGCUg- -3'
miRNA:   3'- ucUAGUGCUGCGCCGC-CUgGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 64239 0.69 0.686859
Target:  5'- aGGGcCGCGACgGCGGCgcGGGCCAcGCUcUCg -3'
miRNA:   3'- -UCUaGUGCUG-CGCCG--CCUGGU-CGA-AG- -5'
29602 5' -56.9 NC_006151.1 + 137128 0.69 0.686859
Target:  5'- cGcgCgACGGCGCGGCGcGACgCGGCg-- -3'
miRNA:   3'- uCuaG-UGCUGCGCCGC-CUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 79786 0.69 0.676731
Target:  5'- cGGAUCGCGgccucgGCGCGGCacACCGGCa-- -3'
miRNA:   3'- -UCUAGUGC------UGCGCCGccUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 5079 0.69 0.676731
Target:  5'- aGGGcCGCGGggcCGCGGCGGgcGCCGGCg-- -3'
miRNA:   3'- -UCUaGUGCU---GCGCCGCC--UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 141632 0.7 0.666567
Target:  5'- cGGGUCgcugccgcgGCGGCGCGGCGgGGCCccgcgGGCUc- -3'
miRNA:   3'- -UCUAG---------UGCUGCGCCGC-CUGG-----UCGAag -5'
29602 5' -56.9 NC_006151.1 + 63413 0.7 0.666567
Target:  5'- cGggCACGGCGCaGGCGGG-CGGCacgUCg -3'
miRNA:   3'- uCuaGUGCUGCG-CCGCCUgGUCGa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.