miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 90232 0.82 0.152865
Target:  5'- gAGAUCGCGuCGCGGCuGGCCAGCg-- -3'
miRNA:   3'- -UCUAGUGCuGCGCCGcCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 107030 0.8 0.196722
Target:  5'- uGAUCGCGGCGCGGCcccuGGCCGGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGCCGc---CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 55873 0.78 0.245213
Target:  5'- gAGAUCGCGGCgcugucGCGGCGGACguGCg-- -3'
miRNA:   3'- -UCUAGUGCUG------CGCCGCCUGguCGaag -5'
29602 5' -56.9 NC_006151.1 + 84378 0.76 0.310278
Target:  5'- cGAUCGCGGCGCGcGgGGACgGGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC-CgCCUGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 51382 0.75 0.363173
Target:  5'- uGGAUCGUGACGCGGCccgGGGCgAGCgcgUCg -3'
miRNA:   3'- -UCUAGUGCUGCGCCG---CCUGgUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 86722 0.74 0.422002
Target:  5'- uGGUCGCGGCGCGccgccGCGaGGCCGGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC-----CGC-CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 103951 0.74 0.422002
Target:  5'- aAGAUgGCGcuCGCGGCGcGCCAGCgcgUCg -3'
miRNA:   3'- -UCUAgUGCu-GCGCCGCcUGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 33116 0.74 0.422002
Target:  5'- aAGGUCugGGCGCGugccGCGGGCCgAGUgUCg -3'
miRNA:   3'- -UCUAGugCUGCGC----CGCCUGG-UCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 118791 0.74 0.430864
Target:  5'- uGGcgCGCGGCGCGGCGcACCuGGcCUUCg -3'
miRNA:   3'- -UCuaGUGCUGCGCCGCcUGG-UC-GAAG- -5'
29602 5' -56.9 NC_006151.1 + 119838 0.74 0.430864
Target:  5'- ---gCGCGACacggucgagcagGCGGCGGACC-GCUUCg -3'
miRNA:   3'- ucuaGUGCUG------------CGCCGCCUGGuCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 97359 0.74 0.439835
Target:  5'- aAGGcCGCGGCgGCGGCGGGCgCGGCg-- -3'
miRNA:   3'- -UCUaGUGCUG-CGCCGCCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 128008 0.74 0.439835
Target:  5'- cGGUCGCGGgGCGGCGGcgaCGGCgUCu -3'
miRNA:   3'- uCUAGUGCUgCGCCGCCug-GUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 122115 0.74 0.439835
Target:  5'- uGAUCACGccccACGCGGUGGACCuGUc-- -3'
miRNA:   3'- uCUAGUGC----UGCGCCGCCUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 130953 0.73 0.458089
Target:  5'- gGGGUCGCGcggGCGCGG-GGGCCGGUa-- -3'
miRNA:   3'- -UCUAGUGC---UGCGCCgCCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 90665 0.73 0.486207
Target:  5'- ---gCGCGGgGCGGCGGGCC-GCUUg -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUGGuCGAAg -5'
29602 5' -56.9 NC_006151.1 + 27433 0.72 0.505399
Target:  5'- cGGUCcaugGGCGCGGCGGACgCGGUgggUCg -3'
miRNA:   3'- uCUAGug--CUGCGCCGCCUG-GUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 104568 0.72 0.515117
Target:  5'- gGGcgCGCGGCGC-GCGGACguGCUg- -3'
miRNA:   3'- -UCuaGUGCUGCGcCGCCUGguCGAag -5'
29602 5' -56.9 NC_006151.1 + 21436 0.72 0.52491
Target:  5'- gGGGUCGCGGCGUGGgGuGGCCcccGGCggCg -3'
miRNA:   3'- -UCUAGUGCUGCGCCgC-CUGG---UCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 89479 0.72 0.52491
Target:  5'- -cGUCACGuGCGCGGCGGcgaGCCGGUa-- -3'
miRNA:   3'- ucUAGUGC-UGCGCCGCC---UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 10196 0.72 0.544699
Target:  5'- cGGUCGCGGCGCgGGCGG--CGGCUg- -3'
miRNA:   3'- uCUAGUGCUGCG-CCGCCugGUCGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.