miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 127828 0.66 0.860398
Target:  5'- cGGuUCACGuACGUGGCGGcguCgCGGCUg- -3'
miRNA:   3'- -UCuAGUGC-UGCGCCGCCu--G-GUCGAag -5'
29602 5' -56.9 NC_006151.1 + 90232 0.82 0.152865
Target:  5'- gAGAUCGCGuCGCGGCuGGCCAGCg-- -3'
miRNA:   3'- -UCUAGUGCuGCGCCGcCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 131768 0.66 0.844714
Target:  5'- cGGUCGCGAcCGCGGCcgcGGGCgCcGCcgUCg -3'
miRNA:   3'- uCUAGUGCU-GCGCCG---CCUG-GuCGa-AG- -5'
29602 5' -56.9 NC_006151.1 + 90736 0.66 0.851871
Target:  5'- cGGUgGCGGCggcgcccucggggGCGGCGGGCaCGGUggCg -3'
miRNA:   3'- uCUAgUGCUG-------------CGCCGCCUG-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 137728 0.66 0.852656
Target:  5'- -cGUCGcCGuACGCGGUGG-CCGGCg-- -3'
miRNA:   3'- ucUAGU-GC-UGCGCCGCCuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 24723 0.66 0.852656
Target:  5'- cAGAUCGCaccGAaagUGCGGCaGGACCAGgCacgUCg -3'
miRNA:   3'- -UCUAGUG---CU---GCGCCG-CCUGGUC-Ga--AG- -5'
29602 5' -56.9 NC_006151.1 + 36504 0.66 0.855777
Target:  5'- cGGUCggugagcccgggccgGCGGCGCGGCcucGGACCccGGCg-- -3'
miRNA:   3'- uCUAG---------------UGCUGCGCCG---CCUGG--UCGaag -5'
29602 5' -56.9 NC_006151.1 + 107173 0.66 0.858866
Target:  5'- gAGAUCcccuuccuggaGACGaCGGaGGACCAGCUg- -3'
miRNA:   3'- -UCUAGug---------CUGC-GCCgCCUGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 100799 0.66 0.860398
Target:  5'- ---cCACGAgGUGGCGGGCgaCGGCg-- -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG--GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 40545 0.66 0.860398
Target:  5'- gAGGUgGCGGCgGUGGUGGAagCGGCggCg -3'
miRNA:   3'- -UCUAgUGCUG-CGCCGCCUg-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 72253 0.66 0.860398
Target:  5'- ---cCGCGGCcgccgacgccgaGCGGCGuGGCCAGCa-- -3'
miRNA:   3'- ucuaGUGCUG------------CGCCGC-CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 115585 0.66 0.87526
Target:  5'- cAGGUCGCGcucgagcagcuCGCGcGUGGcCCAGCgcgUCu -3'
miRNA:   3'- -UCUAGUGCu----------GCGC-CGCCuGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 137605 0.66 0.860398
Target:  5'- gGGAUCgGgGGCGCgGGCGGGgaccCCGGCg-- -3'
miRNA:   3'- -UCUAG-UgCUGCG-CCGCCU----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 28782 0.66 0.867935
Target:  5'- cGAgu-CGGCGgGGCGGuCCGGCc-- -3'
miRNA:   3'- uCUaguGCUGCgCCGCCuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 11061 0.66 0.867935
Target:  5'- uGGA-CGCGGgccacacugUGCGGCGGACCGuGCc-- -3'
miRNA:   3'- -UCUaGUGCU---------GCGCCGCCUGGU-CGaag -5'
29602 5' -56.9 NC_006151.1 + 129929 0.66 0.867935
Target:  5'- gAGAgCGCGAUGCugcccaGCGGcACCAGCg-- -3'
miRNA:   3'- -UCUaGUGCUGCGc-----CGCC-UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 120718 0.66 0.872356
Target:  5'- gGGAUCACGAUGCagucgaagcgcccGCGGGacCCGGCcgcgUCa -3'
miRNA:   3'- -UCUAGUGCUGCGc------------CGCCU--GGUCGa---AG- -5'
29602 5' -56.9 NC_006151.1 + 75127 0.66 0.87526
Target:  5'- uGGUCgGCGGCcgGCGGCGcGGcCCAGCg-- -3'
miRNA:   3'- uCUAG-UGCUG--CGCCGC-CU-GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 95426 0.66 0.87526
Target:  5'- cAGAggUugGACGUGGCGaGGgCGGCg-- -3'
miRNA:   3'- -UCUa-GugCUGCGCCGC-CUgGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 96809 0.66 0.87526
Target:  5'- gGGcgCGCGGgcuuuuaGCGGCGGGCCcGCc-- -3'
miRNA:   3'- -UCuaGUGCUg------CGCCGCCUGGuCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.