miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 4155 0.67 0.793278
Target:  5'- gGGAUCGCGuCGCGgaGCGcGAgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCuGCGC--CGC-CUgGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 4400 0.66 0.87526
Target:  5'- gGGGUcCGCGGCGCGGCccGGGuaGGCcaugUCg -3'
miRNA:   3'- -UCUA-GUGCUGCGCCG--CCUggUCGa---AG- -5'
29602 5' -56.9 NC_006151.1 + 5079 0.69 0.676731
Target:  5'- aGGGcCGCGGggcCGCGGCGGgcGCCGGCg-- -3'
miRNA:   3'- -UCUaGUGCU---GCGCCGCC--UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 5333 0.66 0.844714
Target:  5'- ---cCGCGGCcGCGGCGGAgggcgcccucuCCGGCg-- -3'
miRNA:   3'- ucuaGUGCUG-CGCCGCCU-----------GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 10196 0.72 0.544699
Target:  5'- cGGUCGCGGCGCgGGCGG--CGGCUg- -3'
miRNA:   3'- uCUAGUGCUGCG-CCGCCugGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 10699 0.69 0.726827
Target:  5'- uGAUCACGuuCGCGcaccGCGGcGCCAGCa-- -3'
miRNA:   3'- uCUAGUGCu-GCGC----CGCC-UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 11061 0.66 0.867935
Target:  5'- uGGA-CGCGGgccacacugUGCGGCGGACCGuGCc-- -3'
miRNA:   3'- -UCUaGUGCU---------GCGCCGCCUGGU-CGaag -5'
29602 5' -56.9 NC_006151.1 + 14565 0.67 0.819762
Target:  5'- ---cCACaggGACGCGaGCgGGACCGGCUggUCg -3'
miRNA:   3'- ucuaGUG---CUGCGC-CG-CCUGGUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 17400 0.71 0.595099
Target:  5'- cGGggCGCGuggcGCGCGGCagcaGGGCCAGCg-- -3'
miRNA:   3'- -UCuaGUGC----UGCGCCG----CCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 17819 0.68 0.755979
Target:  5'- ---cCugGGCGCGGCGGgGCgGGCg-- -3'
miRNA:   3'- ucuaGugCUGCGCCGCC-UGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 17924 0.71 0.584938
Target:  5'- uGAUCGCGACgcccaucaggcaGCGGCGGcgucuCCGGCg-- -3'
miRNA:   3'- uCUAGUGCUG------------CGCCGCCu----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 18683 0.68 0.784149
Target:  5'- cGGGUucCACGggcGCGCgGGCGGcGCCGGCgUCg -3'
miRNA:   3'- -UCUA--GUGC---UGCG-CCGCC-UGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 21436 0.72 0.52491
Target:  5'- gGGGUCGCGGCGUGGgGuGGCCcccGGCggCg -3'
miRNA:   3'- -UCUAGUGCUGCGCCgC-CUGG---UCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 21501 0.7 0.645142
Target:  5'- gGGggCGCGGgcgucacCGgGGCGGGCUcgGGCUUCg -3'
miRNA:   3'- -UCuaGUGCU-------GCgCCGCCUGG--UCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 24723 0.66 0.852656
Target:  5'- cAGAUCGCaccGAaagUGCGGCaGGACCAGgCacgUCg -3'
miRNA:   3'- -UCUAGUG---CU---GCGCCG-CCUGGUC-Ga--AG- -5'
29602 5' -56.9 NC_006151.1 + 26346 0.67 0.793278
Target:  5'- --cUCACGggGCgGCGGCGGGCC-GCgUCg -3'
miRNA:   3'- ucuAGUGC--UG-CGCCGCCUGGuCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 27433 0.72 0.505399
Target:  5'- cGGUCcaugGGCGCGGCGGACgCGGUgggUCg -3'
miRNA:   3'- uCUAGug--CUGCGCCGCCUG-GUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 28782 0.66 0.867935
Target:  5'- cGAgu-CGGCGgGGCGGuCCGGCc-- -3'
miRNA:   3'- uCUaguGCUGCgCCGCCuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 29585 0.68 0.764545
Target:  5'- cGGAUCGCGGCggcugcggccgcgGCGGCGGG--GGCUg- -3'
miRNA:   3'- -UCUAGUGCUG-------------CGCCGCCUggUCGAag -5'
29602 5' -56.9 NC_006151.1 + 33116 0.74 0.422002
Target:  5'- aAGGUCugGGCGCGugccGCGGGCCgAGUgUCg -3'
miRNA:   3'- -UCUAGugCUGCGC----CGCCUGG-UCGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.