miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 141632 0.7 0.666567
Target:  5'- cGGGUCgcugccgcgGCGGCGCGGCGgGGCCccgcgGGCUc- -3'
miRNA:   3'- -UCUAG---------UGCUGCGCCGC-CUGG-----UCGAag -5'
29602 5' -56.9 NC_006151.1 + 137728 0.66 0.852656
Target:  5'- -cGUCGcCGuACGCGGUGG-CCGGCg-- -3'
miRNA:   3'- ucUAGU-GC-UGCGCCGCCuGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 137605 0.66 0.860398
Target:  5'- gGGAUCgGgGGCGCgGGCGGGgaccCCGGCg-- -3'
miRNA:   3'- -UCUAG-UgCUGCG-CCGCCU----GGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 137128 0.69 0.686859
Target:  5'- cGcgCgACGGCGCGGCGcGACgCGGCg-- -3'
miRNA:   3'- uCuaG-UGCUGCGCCGC-CUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 136833 0.67 0.819762
Target:  5'- cGGGcUCuGCGACGCGGCc-GCCGGCcUCg -3'
miRNA:   3'- -UCU-AG-UGCUGCGCCGccUGGUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 133626 0.68 0.764545
Target:  5'- gGGGUCGCGGCggccgggGCGGUGGuCCGGgUg- -3'
miRNA:   3'- -UCUAGUGCUG-------CGCCGCCuGGUCgAag -5'
29602 5' -56.9 NC_006151.1 + 132376 0.68 0.787818
Target:  5'- aGGcgCGCGACGUcGCGGuaguagcgcccgcgcACCAGCUg- -3'
miRNA:   3'- -UCuaGUGCUGCGcCGCC---------------UGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 132116 0.67 0.819762
Target:  5'- cGcgCACGA-GCGGCaGGcCCAGCUc- -3'
miRNA:   3'- uCuaGUGCUgCGCCG-CCuGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 132044 0.69 0.70697
Target:  5'- cGGcgCGCGgcaGCGCGGCGGAgaaCGGCg-- -3'
miRNA:   3'- -UCuaGUGC---UGCGCCGCCUg--GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 131768 0.66 0.844714
Target:  5'- cGGUCGCGAcCGCGGCcgcGGGCgCcGCcgUCg -3'
miRNA:   3'- uCUAGUGCU-GCGCCG---CCUG-GuCGa-AG- -5'
29602 5' -56.9 NC_006151.1 + 130953 0.73 0.458089
Target:  5'- gGGGUCGCGcggGCGCGG-GGGCCGGUa-- -3'
miRNA:   3'- -UCUAGUGC---UGCGCCgCCUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 130372 0.68 0.774884
Target:  5'- cGcgCGCGcCGCGGCGuccagcgcgaaGGCCAGCgccUCg -3'
miRNA:   3'- uCuaGUGCuGCGCCGC-----------CUGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 129929 0.66 0.867935
Target:  5'- gAGAgCGCGAUGCugcccaGCGGcACCAGCg-- -3'
miRNA:   3'- -UCUaGUGCUGCGc-----CGCC-UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 128616 0.66 0.83658
Target:  5'- ---cCGCGGCGUgcgccccagguGGCGGACCAcGCgcgcgUCg -3'
miRNA:   3'- ucuaGUGCUGCG-----------CCGCCUGGU-CGa----AG- -5'
29602 5' -56.9 NC_006151.1 + 128008 0.74 0.439835
Target:  5'- cGGUCGCGGgGCGGCGGcgaCGGCgUCu -3'
miRNA:   3'- uCUAGUGCUgCGCCGCCug-GUCGaAG- -5'
29602 5' -56.9 NC_006151.1 + 127828 0.66 0.860398
Target:  5'- cGGuUCACGuACGUGGCGGcguCgCGGCUg- -3'
miRNA:   3'- -UCuAGUGC-UGCGCCGCCu--G-GUCGAag -5'
29602 5' -56.9 NC_006151.1 + 126278 0.67 0.811093
Target:  5'- cGAagGCGACGUGGaCGaGGCCAaGCUg- -3'
miRNA:   3'- uCUagUGCUGCGCC-GC-CUGGU-CGAag -5'
29602 5' -56.9 NC_006151.1 + 123213 0.69 0.716935
Target:  5'- ---gUACGugGCGGUGGccGCCGGgUUCc -3'
miRNA:   3'- ucuaGUGCugCGCCGCC--UGGUCgAAG- -5'
29602 5' -56.9 NC_006151.1 + 122163 0.67 0.80846
Target:  5'- cGcgCACGAUcgGCGGCGGGCUcguggugccgccggAGCUg- -3'
miRNA:   3'- uCuaGUGCUG--CGCCGCCUGG--------------UCGAag -5'
29602 5' -56.9 NC_006151.1 + 122115 0.74 0.439835
Target:  5'- uGAUCACGccccACGCGGUGGACCuGUc-- -3'
miRNA:   3'- uCUAGUGC----UGCGCCGCCUGGuCGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.