miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29602 5' -56.9 NC_006151.1 + 120718 0.66 0.872356
Target:  5'- gGGAUCACGAUGCagucgaagcgcccGCGGGacCCGGCcgcgUCa -3'
miRNA:   3'- -UCUAGUGCUGCGc------------CGCCU--GGUCGa---AG- -5'
29602 5' -56.9 NC_006151.1 + 119838 0.74 0.430864
Target:  5'- ---gCGCGACacggucgagcagGCGGCGGACC-GCUUCg -3'
miRNA:   3'- ucuaGUGCUG------------CGCCGCCUGGuCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 118881 0.7 0.625716
Target:  5'- ----gGCGGCGCGGCGGcgacgcggccGCCGGCg-- -3'
miRNA:   3'- ucuagUGCUGCGCCGCC----------UGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 118791 0.74 0.430864
Target:  5'- uGGcgCGCGGCGCGGCGcACCuGGcCUUCg -3'
miRNA:   3'- -UCuaGUGCUGCGCCGCcUGG-UC-GAAG- -5'
29602 5' -56.9 NC_006151.1 + 118159 0.67 0.811093
Target:  5'- cGGUgGCGccgcugguGCGCGGCcugaccgucGaGGCCGGCUUCg -3'
miRNA:   3'- uCUAgUGC--------UGCGCCG---------C-CUGGUCGAAG- -5'
29602 5' -56.9 NC_006151.1 + 115585 0.66 0.87526
Target:  5'- cAGGUCGCGcucgagcagcuCGCGcGUGGcCCAGCgcgUCu -3'
miRNA:   3'- -UCUAGUGCu----------GCGC-CGCCuGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 113443 0.67 0.819762
Target:  5'- --uUC-CGGCGCGGCGuGCuCAGCUacUCg -3'
miRNA:   3'- ucuAGuGCUGCGCCGCcUG-GUCGA--AG- -5'
29602 5' -56.9 NC_006151.1 + 111662 0.7 0.656375
Target:  5'- uGAUCGCGgccagggggGCGuCGGCGGGCCGGa--- -3'
miRNA:   3'- uCUAGUGC---------UGC-GCCGCCUGGUCgaag -5'
29602 5' -56.9 NC_006151.1 + 107173 0.66 0.858866
Target:  5'- gAGAUCcccuuccuggaGACGaCGGaGGACCAGCUg- -3'
miRNA:   3'- -UCUAGug---------CUGC-GCCgCCUGGUCGAag -5'
29602 5' -56.9 NC_006151.1 + 107030 0.8 0.196722
Target:  5'- uGAUCGCGGCGCGGCcccuGGCCGGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGCCGc---CUGGUCGaag -5'
29602 5' -56.9 NC_006151.1 + 106342 0.7 0.656375
Target:  5'- cGcgCugGACGCGGUGGACaC-GCUg- -3'
miRNA:   3'- uCuaGugCUGCGCCGCCUG-GuCGAag -5'
29602 5' -56.9 NC_006151.1 + 104894 0.68 0.774884
Target:  5'- ---gCGCGAgGUGGUGGACgCGGCggCg -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG-GUCGaaG- -5'
29602 5' -56.9 NC_006151.1 + 104842 0.69 0.726827
Target:  5'- ---cCGCGGCGgaGGCGGACCAGg--- -3'
miRNA:   3'- ucuaGUGCUGCg-CCGCCUGGUCgaag -5'
29602 5' -56.9 NC_006151.1 + 104568 0.72 0.515117
Target:  5'- gGGcgCGCGGCGC-GCGGACguGCUg- -3'
miRNA:   3'- -UCuaGUGCUGCGcCGCCUGguCGAag -5'
29602 5' -56.9 NC_006151.1 + 104263 0.66 0.844714
Target:  5'- gAGAaCGcCGGCGCGGCGG-CgGGCc-- -3'
miRNA:   3'- -UCUaGU-GCUGCGCCGCCuGgUCGaag -5'
29602 5' -56.9 NC_006151.1 + 104130 0.68 0.755979
Target:  5'- ---gCGCGACGUGGCGGccgACCgcGGCUa- -3'
miRNA:   3'- ucuaGUGCUGCGCCGCC---UGG--UCGAag -5'
29602 5' -56.9 NC_006151.1 + 103951 0.74 0.422002
Target:  5'- aAGAUgGCGcuCGCGGCGcGCCAGCgcgUCg -3'
miRNA:   3'- -UCUAgUGCu-GCGCCGCcUGGUCGa--AG- -5'
29602 5' -56.9 NC_006151.1 + 102400 0.68 0.774884
Target:  5'- uGGUCGCGGCGCGcgucGCGcGGCCcGCg-- -3'
miRNA:   3'- uCUAGUGCUGCGC----CGC-CUGGuCGaag -5'
29602 5' -56.9 NC_006151.1 + 101383 0.68 0.762649
Target:  5'- cAGAUCACGGCGCgcgccuucuucgacGGCcucuGGGCgCAGCg-- -3'
miRNA:   3'- -UCUAGUGCUGCG--------------CCG----CCUG-GUCGaag -5'
29602 5' -56.9 NC_006151.1 + 100799 0.66 0.860398
Target:  5'- ---cCACGAgGUGGCGGGCgaCGGCg-- -3'
miRNA:   3'- ucuaGUGCUgCGCCGCCUG--GUCGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.