miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29603 5' -60.6 NC_006151.1 + 137505 0.66 0.706116
Target:  5'- --cGCCGAcuuUGGCGC-CGCGCcGGGc -3'
miRNA:   3'- cuuCGGCUcc-ACCGCGuGCGCGuCCU- -5'
29603 5' -60.6 NC_006151.1 + 72590 0.66 0.706116
Target:  5'- aGAGUCGGGGUGaGgGgGgGgGCAGGGc -3'
miRNA:   3'- cUUCGGCUCCAC-CgCgUgCgCGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 91527 0.66 0.706116
Target:  5'- uGAAGaCGAGGaaGGCGUGCGCG-AGGu -3'
miRNA:   3'- -CUUCgGCUCCa-CCGCGUGCGCgUCCu -5'
29603 5' -60.6 NC_006151.1 + 2280 0.66 0.706116
Target:  5'- -cGGCCGGcGG-GGCGCcCGCgGCGGcGAc -3'
miRNA:   3'- cuUCGGCU-CCaCCGCGuGCG-CGUC-CU- -5'
29603 5' -60.6 NC_006151.1 + 64444 0.66 0.706116
Target:  5'- -uGGCCGccuccaccgucAGGaUGGCgGCGCGCGCcgccgcggcgGGGAc -3'
miRNA:   3'- cuUCGGC-----------UCC-ACCG-CGUGCGCG----------UCCU- -5'
29603 5' -60.6 NC_006151.1 + 106672 0.66 0.706116
Target:  5'- cGAGGCCGc---GGCGCucgGCGCGCcGGGc -3'
miRNA:   3'- -CUUCGGCuccaCCGCG---UGCGCGuCCU- -5'
29603 5' -60.6 NC_006151.1 + 133469 0.66 0.705134
Target:  5'- cGAGGCCcgcGAGGcggccgcgGGCGuCACcuuggcgGCGCGGGGg -3'
miRNA:   3'- -CUUCGG---CUCCa-------CCGC-GUG-------CGCGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 81219 0.66 0.703169
Target:  5'- gGgcGCCGgcgcgugaacacgaAGcUGGCGCcccCGCGCAGGGg -3'
miRNA:   3'- -CuuCGGC--------------UCcACCGCGu--GCGCGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 107086 0.66 0.696271
Target:  5'- -cAGCUGGcGGUGuCGCGCGUGCucuGGGc -3'
miRNA:   3'- cuUCGGCU-CCACcGCGUGCGCGu--CCU- -5'
29603 5' -60.6 NC_006151.1 + 18675 0.66 0.696271
Target:  5'- -cGGCCGuacGGGUuccacgGGCGCGCGgGCGGc- -3'
miRNA:   3'- cuUCGGC---UCCA------CCGCGUGCgCGUCcu -5'
29603 5' -60.6 NC_006151.1 + 49633 0.66 0.696271
Target:  5'- cGAGUgGGGGUGG-GC-CGUGgAGGAg -3'
miRNA:   3'- cUUCGgCUCCACCgCGuGCGCgUCCU- -5'
29603 5' -60.6 NC_006151.1 + 76686 0.66 0.696271
Target:  5'- gGGAGCagggggGAGaGUGGCGCGgGCGCGc-- -3'
miRNA:   3'- -CUUCGg-----CUC-CACCGCGUgCGCGUccu -5'
29603 5' -60.6 NC_006151.1 + 83326 0.66 0.695284
Target:  5'- aGGGCCGuGagcaggcgcgcGUccacgugcuccccGGCGCGCGCGCGGGc -3'
miRNA:   3'- cUUCGGCuC-----------CA-------------CCGCGUGCGCGUCCu -5'
29603 5' -60.6 NC_006151.1 + 134816 0.66 0.695284
Target:  5'- --cGCCGGacccggacGGUGGCgaccGCGCGCGCAcacacgcGGGg -3'
miRNA:   3'- cuuCGGCU--------CCACCG----CGUGCGCGU-------CCU- -5'
29603 5' -60.6 NC_006151.1 + 93671 0.66 0.686375
Target:  5'- gGAGGCUGucgcgcGG-GGCGCGCGCccGCAGa- -3'
miRNA:   3'- -CUUCGGCu-----CCaCCGCGUGCG--CGUCcu -5'
29603 5' -60.6 NC_006151.1 + 55386 0.66 0.686375
Target:  5'- cGAGCagGAGGUgcGGCGCcuGCGCgaGCAGGc -3'
miRNA:   3'- cUUCGg-CUCCA--CCGCG--UGCG--CGUCCu -5'
29603 5' -60.6 NC_006151.1 + 66911 0.66 0.686375
Target:  5'- --cGCCGAGGagGGC-CACGauggagGCGGGGg -3'
miRNA:   3'- cuuCGGCUCCa-CCGcGUGCg-----CGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 133400 0.66 0.686375
Target:  5'- cGggGCCGAGcG-GGCGgucuuggcCGCGgaCGCGGGGg -3'
miRNA:   3'- -CuuCGGCUC-CaCCGC--------GUGC--GCGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 138702 0.66 0.686375
Target:  5'- --cGCUGAGcccGGCGCugcgcgccGCGCGCGGGu -3'
miRNA:   3'- cuuCGGCUCca-CCGCG--------UGCGCGUCCu -5'
29603 5' -60.6 NC_006151.1 + 11044 0.66 0.686375
Target:  5'- -cGGCCGGGGgcccGGC-CugGaCGCGGGc -3'
miRNA:   3'- cuUCGGCUCCa---CCGcGugC-GCGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.