miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29604 5' -58.3 NC_006151.1 + 33899 0.8 0.182405
Target:  5'- gGCGGGGGccucGCGcCUCCGCGUCCGGCgggCGg -3'
miRNA:   3'- -CGCUCUC----CGC-GAGGUGCAGGCUGa--GC- -5'
29604 5' -58.3 NC_006151.1 + 53995 0.75 0.342237
Target:  5'- cGCGGcGAGcucccggacGCGCUCCACGaUCGGCUCGa -3'
miRNA:   3'- -CGCU-CUC---------CGCGAGGUGCaGGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 96447 0.74 0.389181
Target:  5'- gGCGAGccAGGCG-UCCAgGUCCGcCUCGc -3'
miRNA:   3'- -CGCUC--UCCGCgAGGUgCAGGCuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 94522 0.73 0.422734
Target:  5'- cGCGGGAGGCGUguaacuUCC-CGUCggcgGGCUCGg -3'
miRNA:   3'- -CGCUCUCCGCG------AGGuGCAGg---CUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 141503 0.72 0.485392
Target:  5'- gGCGAcGGGCGuCUCCACGggggCCGAggCGa -3'
miRNA:   3'- -CGCUcUCCGC-GAGGUGCa---GGCUgaGC- -5'
29604 5' -58.3 NC_006151.1 + 86649 0.72 0.504104
Target:  5'- aGCGAgGAGGCGCUCaCGCGcgcgCUGcuCUCGa -3'
miRNA:   3'- -CGCU-CUCCGCGAG-GUGCa---GGCu-GAGC- -5'
29604 5' -58.3 NC_006151.1 + 2327 0.71 0.532733
Target:  5'- aGCGGGGcGGC-CUCgGCGUCgGGCUCc -3'
miRNA:   3'- -CGCUCU-CCGcGAGgUGCAGgCUGAGc -5'
29604 5' -58.3 NC_006151.1 + 83331 0.71 0.55214
Target:  5'- cGUGAGcAGGCGCgcgUCCACGUgcuccCCGGCgcgCGc -3'
miRNA:   3'- -CGCUC-UCCGCG---AGGUGCA-----GGCUGa--GC- -5'
29604 5' -58.3 NC_006151.1 + 11346 0.71 0.55214
Target:  5'- cGCGGGccgcccgcGGGCGCUaCCGCGcgcUCCG-CUCGc -3'
miRNA:   3'- -CGCUC--------UCCGCGA-GGUGC---AGGCuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 57106 0.71 0.561924
Target:  5'- cGCGAGcAGcGCGCgccgCCGCGcCCGGCggUCGc -3'
miRNA:   3'- -CGCUC-UC-CGCGa---GGUGCaGGCUG--AGC- -5'
29604 5' -58.3 NC_006151.1 + 27143 0.71 0.575698
Target:  5'- cGCGAaaGAGGCGgUUCACGUCggccccgaggcgccgCGugUCGg -3'
miRNA:   3'- -CGCU--CUCCGCgAGGUGCAG---------------GCugAGC- -5'
29604 5' -58.3 NC_006151.1 + 142158 0.7 0.591531
Target:  5'- gGCGcaGGGGGCucguccacCUCCAUGggcUCCGACUCGg -3'
miRNA:   3'- -CGC--UCUCCGc-------GAGGUGC---AGGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 100766 0.7 0.61142
Target:  5'- uGCGcGAGGcCGCggaCCGCGUCCugggcGACUCc -3'
miRNA:   3'- -CGCuCUCC-GCGa--GGUGCAGG-----CUGAGc -5'
29604 5' -58.3 NC_006151.1 + 133657 0.7 0.62139
Target:  5'- uGCGAGAGGCGCUgCCggcGCGg-CGGCgCGc -3'
miRNA:   3'- -CGCUCUCCGCGA-GG---UGCagGCUGaGC- -5'
29604 5' -58.3 NC_006151.1 + 133442 0.7 0.62139
Target:  5'- gGCGGccGAGGCGCUCUugGccCCGG-UCGa -3'
miRNA:   3'- -CGCU--CUCCGCGAGGugCa-GGCUgAGC- -5'
29604 5' -58.3 NC_006151.1 + 82145 0.7 0.631368
Target:  5'- gGCGGGcccGGCgGCUCCAgGUCCGAgcCGa -3'
miRNA:   3'- -CGCUCu--CCG-CGAGGUgCAGGCUgaGC- -5'
29604 5' -58.3 NC_006151.1 + 23095 0.7 0.631368
Target:  5'- cGCuGGAGGUcaGCUCCuCGUCCucCUCGg -3'
miRNA:   3'- -CGcUCUCCG--CGAGGuGCAGGcuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 51979 0.69 0.641346
Target:  5'- aGCGAGGcGaGCaGCUCCGCGgugCCGGCgugCa -3'
miRNA:   3'- -CGCUCU-C-CG-CGAGGUGCa--GGCUGa--Gc -5'
29604 5' -58.3 NC_006151.1 + 22291 0.69 0.641346
Target:  5'- cGCGGGcacGGCG-UCCACGUCCGcGC-CGa -3'
miRNA:   3'- -CGCUCu--CCGCgAGGUGCAGGC-UGaGC- -5'
29604 5' -58.3 NC_006151.1 + 28107 0.69 0.661275
Target:  5'- aGCGGGGcGCgGCUCCuCGUC-GGCUCGg -3'
miRNA:   3'- -CGCUCUcCG-CGAGGuGCAGgCUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.