miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29604 5' -58.3 NC_006151.1 + 2327 0.71 0.532733
Target:  5'- aGCGGGGcGGC-CUCgGCGUCgGGCUCc -3'
miRNA:   3'- -CGCUCU-CCGcGAGgUGCAGgCUGAGc -5'
29604 5' -58.3 NC_006151.1 + 2939 0.69 0.67121
Target:  5'- cGCGAgcaGAGGUaCUCCACGgcgCCGGCg-- -3'
miRNA:   3'- -CGCU---CUCCGcGAGGUGCa--GGCUGagc -5'
29604 5' -58.3 NC_006151.1 + 3137 0.68 0.739444
Target:  5'- gGCGcGGGGCGC-CCuCGgCgGGCUCGg -3'
miRNA:   3'- -CGCuCUCCGCGaGGuGCaGgCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 7060 0.67 0.794572
Target:  5'- cGCGcGGAGGCGuCUcCCGCGcgccUCUGAUUUGc -3'
miRNA:   3'- -CGC-UCUCCGC-GA-GGUGC----AGGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 8008 0.66 0.820368
Target:  5'- gGCGGGAGGgGg--CGCGagaCCGGCUCGg -3'
miRNA:   3'- -CGCUCUCCgCgagGUGCa--GGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 11346 0.71 0.55214
Target:  5'- cGCGGGccgcccgcGGGCGCUaCCGCGcgcUCCG-CUCGc -3'
miRNA:   3'- -CGCUC--------UCCGCGA-GGUGC---AGGCuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 16881 0.66 0.844701
Target:  5'- cGCGGGGcGCGCU-CGCGUCCGuuGC-CGc -3'
miRNA:   3'- -CGCUCUcCGCGAgGUGCAGGC--UGaGC- -5'
29604 5' -58.3 NC_006151.1 + 17322 0.67 0.767523
Target:  5'- cCGGGGGGCGC--CGCGUCa-GCUCGu -3'
miRNA:   3'- cGCUCUCCGCGagGUGCAGgcUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 20147 0.68 0.716393
Target:  5'- cGCGGGGgcGGCGCguggaccgccgggCCGCGcCCGGgUCGc -3'
miRNA:   3'- -CGCUCU--CCGCGa------------GGUGCaGGCUgAGC- -5'
29604 5' -58.3 NC_006151.1 + 20481 0.68 0.710564
Target:  5'- -gGGGGGGCGCgggggucgUCgGCGgcUCUGGCUCGa -3'
miRNA:   3'- cgCUCUCCGCG--------AGgUGC--AGGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 21321 0.67 0.803321
Target:  5'- cGCGAGAcgcccGGCGCggcgggggUCCGCGgcuggaaCGGCUCc -3'
miRNA:   3'- -CGCUCU-----CCGCG--------AGGUGCag-----GCUGAGc -5'
29604 5' -58.3 NC_006151.1 + 21446 0.69 0.67121
Target:  5'- cGUGGGGuggcccccggcGGCGUggucCCGCGUcgCCGGCUCGg -3'
miRNA:   3'- -CGCUCU-----------CCGCGa---GGUGCA--GGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 21498 0.67 0.785684
Target:  5'- cCGGGGGGCGCgggcgUCAcCGgggCgGGCUCGg -3'
miRNA:   3'- cGCUCUCCGCGa----GGU-GCa--GgCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 22291 0.69 0.641346
Target:  5'- cGCGGGcacGGCG-UCCACGUCCGcGC-CGa -3'
miRNA:   3'- -CGCUCu--CCGCgAGGUGCAGGC-UGaGC- -5'
29604 5' -58.3 NC_006151.1 + 23095 0.7 0.631368
Target:  5'- cGCuGGAGGUcaGCUCCuCGUCCucCUCGg -3'
miRNA:   3'- -CGcUCUCCG--CGAGGuGCAGGcuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 27143 0.71 0.575698
Target:  5'- cGCGAaaGAGGCGgUUCACGUCggccccgaggcgccgCGugUCGg -3'
miRNA:   3'- -CGCU--CUCCGCgAGGUGCAG---------------GCugAGC- -5'
29604 5' -58.3 NC_006151.1 + 28107 0.69 0.661275
Target:  5'- aGCGGGGcGCgGCUCCuCGUC-GGCUCGg -3'
miRNA:   3'- -CGCUCUcCG-CGAGGuGCAGgCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 31736 0.68 0.710564
Target:  5'- -gGAGAGGCGC-CCGCG-CCGGg--- -3'
miRNA:   3'- cgCUCUCCGCGaGGUGCaGGCUgagc -5'
29604 5' -58.3 NC_006151.1 + 32143 0.67 0.803321
Target:  5'- aGCGAGGGGCGCgagCGCuUCCucCUCc -3'
miRNA:   3'- -CGCUCUCCGCGag-GUGcAGGcuGAGc -5'
29604 5' -58.3 NC_006151.1 + 33899 0.8 0.182405
Target:  5'- gGCGGGGGccucGCGcCUCCGCGUCCGGCgggCGg -3'
miRNA:   3'- -CGCUCUC----CGC-GAGGUGCAGGCUGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.