miRNA display CGI


Results 61 - 80 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 19302 0.66 0.917633
Target:  5'- gCGGCGCgGGCgGCcgGUCGCCcACcGCc -3'
miRNA:   3'- gGUUGCGgCCGgCG--UAGUGGuUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 37383 0.66 0.917633
Target:  5'- uCCGGCcgaCGGCCGCGUC-C--GCUACg -3'
miRNA:   3'- -GGUUGcg-GCCGGCGUAGuGguUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 66471 0.66 0.917633
Target:  5'- cCCGGCgGUCGGCaCGCu--GCaCAACUGCu -3'
miRNA:   3'- -GGUUG-CGGCCG-GCGuagUG-GUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 66552 0.66 0.917633
Target:  5'- --cGCGCgCGGCCGCGcCGCCGuggACc -3'
miRNA:   3'- gguUGCG-GCCGGCGUaGUGGUugaUG- -5'
29605 3' -54.8 NC_006151.1 + 114457 0.66 0.917633
Target:  5'- gCCuGCGCCGGCCaccGCAUCGUCGcgcACgugugGCa -3'
miRNA:   3'- -GGuUGCGGCCGG---CGUAGUGGU---UGa----UG- -5'
29605 3' -54.8 NC_006151.1 + 129140 0.66 0.917633
Target:  5'- gCCAaagaGCGCCGG-CGCA-CACUGGCUc- -3'
miRNA:   3'- -GGU----UGCGGCCgGCGUaGUGGUUGAug -5'
29605 3' -54.8 NC_006151.1 + 130388 0.66 0.917633
Target:  5'- uCCAGCGCgaaGGCCaGCGccUCGCCcGCgagcGCg -3'
miRNA:   3'- -GGUUGCGg--CCGG-CGU--AGUGGuUGa---UG- -5'
29605 3' -54.8 NC_006151.1 + 65802 0.67 0.912335
Target:  5'- cCCGGCGCggaCGuGCCGCGguggaugggcggccgCGCCAGCgcgGCc -3'
miRNA:   3'- -GGUUGCG---GC-CGGCGUa--------------GUGGUUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 100570 0.67 0.911734
Target:  5'- gCCGGcCGCCugcaGGCCGC--CACCGucCUGCg -3'
miRNA:   3'- -GGUU-GCGG----CCGGCGuaGUGGUu-GAUG- -5'
29605 3' -54.8 NC_006151.1 + 2355 0.67 0.911734
Target:  5'- gCAGCGCCGcGgCGCAgaaggCGCgCAACUcgGCc -3'
miRNA:   3'- gGUUGCGGC-CgGCGUa----GUG-GUUGA--UG- -5'
29605 3' -54.8 NC_006151.1 + 57099 0.67 0.911734
Target:  5'- gCAGCGCCGcgagcagcgcgcGCCGCcgCGcCCGGCg-- -3'
miRNA:   3'- gGUUGCGGC------------CGGCGuaGU-GGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 59572 0.67 0.911734
Target:  5'- gCCAGCGCCGccagcuccaGCCGCccGUCgGCCAccACggGCa -3'
miRNA:   3'- -GGUUGCGGC---------CGGCG--UAG-UGGU--UGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 77679 0.67 0.911734
Target:  5'- gCCGGCGUCGG-CGCucUCGCUGACg-- -3'
miRNA:   3'- -GGUUGCGGCCgGCGu-AGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 103142 0.67 0.911734
Target:  5'- gCCAagcGCGCCucGGCCGa--CGCCGACcugGCg -3'
miRNA:   3'- -GGU---UGCGG--CCGGCguaGUGGUUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 107553 0.67 0.911734
Target:  5'- gCCGGCGCC-GCCGCc-CGCCAAg--- -3'
miRNA:   3'- -GGUUGCGGcCGGCGuaGUGGUUgaug -5'
29605 3' -54.8 NC_006151.1 + 107610 0.67 0.911734
Target:  5'- gCCGGCGCC-GCCGCc-CGCCAAg--- -3'
miRNA:   3'- -GGUUGCGGcCGGCGuaGUGGUUgaug -5'
29605 3' -54.8 NC_006151.1 + 2125 0.67 0.911734
Target:  5'- nCCGuCGCC-GCCGCGgaCGCCGACg-- -3'
miRNA:   3'- -GGUuGCGGcCGGCGUa-GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 2635 0.67 0.911734
Target:  5'- cCCGGCGCgGG-UGC-UCACCGugUAg -3'
miRNA:   3'- -GGUUGCGgCCgGCGuAGUGGUugAUg -5'
29605 3' -54.8 NC_006151.1 + 58179 0.67 0.911734
Target:  5'- aCCAGCGCCGcGuuGCucaCGCCGuggGCc -3'
miRNA:   3'- -GGUUGCGGC-CggCGua-GUGGUugaUG- -5'
29605 3' -54.8 NC_006151.1 + 97814 0.67 0.911734
Target:  5'- gCCGuGCGCCGGUCGCgguaguuggucGUCACguGCgcgcGCa -3'
miRNA:   3'- -GGU-UGCGGCCGGCG-----------UAGUGguUGa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.