miRNA display CGI


Results 41 - 60 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 104176 0.66 0.9287
Target:  5'- cCCGcCGCCGaGCgCGCGcucggCGCCAACg-- -3'
miRNA:   3'- -GGUuGCGGC-CG-GCGUa----GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 49589 0.66 0.927102
Target:  5'- gCCGGCGCCccGGCCaGCG-CGCUGccgguccuggcgguGCUGCg -3'
miRNA:   3'- -GGUUGCGG--CCGG-CGUaGUGGU--------------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 136932 0.66 0.923288
Target:  5'- gCAGCaGCCGGgCGCcgacggCGCCGucCUGCg -3'
miRNA:   3'- gGUUG-CGGCCgGCGua----GUGGUu-GAUG- -5'
29605 3' -54.8 NC_006151.1 + 75828 0.66 0.923288
Target:  5'- gCGcACGCCGGCCGUGgucacagCACCccgucGACgggGCg -3'
miRNA:   3'- gGU-UGCGGCCGGCGUa------GUGG-----UUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 98331 0.66 0.923288
Target:  5'- uUCAugGCCgcgGGCCGCGagaCGCCcGCggGCg -3'
miRNA:   3'- -GGUugCGG---CCGGCGUa--GUGGuUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 113427 0.66 0.923288
Target:  5'- gCUGGCGCUGcGCCGCuUCcggcgcggcguGCuCAGCUACu -3'
miRNA:   3'- -GGUUGCGGC-CGGCGuAG-----------UG-GUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 86576 0.66 0.923288
Target:  5'- cUCGGCGCgGGCgCGC-UC-CgAGCUGCu -3'
miRNA:   3'- -GGUUGCGgCCG-GCGuAGuGgUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 103628 0.66 0.923288
Target:  5'- gCCGACGCggUGGCgGCggCGCUGGCggACg -3'
miRNA:   3'- -GGUUGCG--GCCGgCGuaGUGGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 121093 0.66 0.923288
Target:  5'- gCGGCGCCgGGCUGCAcgACCAcucGCUc- -3'
miRNA:   3'- gGUUGCGG-CCGGCGUagUGGU---UGAug -5'
29605 3' -54.8 NC_006151.1 + 124076 0.66 0.923288
Target:  5'- gCCGuGCGCgCGGCCGCG--ACCGAgcgggaccgcuuCUACg -3'
miRNA:   3'- -GGU-UGCG-GCCGGCGUagUGGUU------------GAUG- -5'
29605 3' -54.8 NC_006151.1 + 86272 0.66 0.923288
Target:  5'- aCGACGaccgCGGCCccuucuuccucgGCGUCGUCAACUGCc -3'
miRNA:   3'- gGUUGCg---GCCGG------------CGUAGUGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 91273 0.66 0.923288
Target:  5'- gCCcGCGuCCGcaaaguacgcgcGCCGCGUCAgCAGCcGCg -3'
miRNA:   3'- -GGuUGC-GGC------------CGGCGUAGUgGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 128407 0.66 0.923288
Target:  5'- aCGACGgCGGCCGUGagGCCGcAC-ACg -3'
miRNA:   3'- gGUUGCgGCCGGCGUagUGGU-UGaUG- -5'
29605 3' -54.8 NC_006151.1 + 59141 0.66 0.921617
Target:  5'- -uGGCGCCcgcgggcggguccaGGCCgGCGUCGCgCAGCaGCg -3'
miRNA:   3'- ggUUGCGG--------------CCGG-CGUAGUG-GUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 50434 0.66 0.919924
Target:  5'- cCCugcGCGCCGGCggccugggcaccgccCGCGggcgcucgCGCCAGCgcgGCg -3'
miRNA:   3'- -GGu--UGCGGCCG---------------GCGUa-------GUGGUUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 129140 0.66 0.917633
Target:  5'- gCCAaagaGCGCCGG-CGCA-CACUGGCUc- -3'
miRNA:   3'- -GGU----UGCGGCCgGCGUaGUGGUUGAug -5'
29605 3' -54.8 NC_006151.1 + 114457 0.66 0.917633
Target:  5'- gCCuGCGCCGGCCaccGCAUCGUCGcgcACgugugGCa -3'
miRNA:   3'- -GGuUGCGGCCGG---CGUAGUGGU---UGa----UG- -5'
29605 3' -54.8 NC_006151.1 + 66552 0.66 0.917633
Target:  5'- --cGCGCgCGGCCGCGcCGCCGuggACc -3'
miRNA:   3'- gguUGCG-GCCGGCGUaGUGGUugaUG- -5'
29605 3' -54.8 NC_006151.1 + 66471 0.66 0.917633
Target:  5'- cCCGGCgGUCGGCaCGCu--GCaCAACUGCu -3'
miRNA:   3'- -GGUUG-CGGCCG-GCGuagUG-GUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 37383 0.66 0.917633
Target:  5'- uCCGGCcgaCGGCCGCGUC-C--GCUACg -3'
miRNA:   3'- -GGUUGcg-GCCGGCGUAGuGguUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.