miRNA display CGI


Results 41 - 60 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 39931 0.71 0.729729
Target:  5'- cCCGACGCCgaGGCCGCccCGCUgguGCUGa -3'
miRNA:   3'- -GGUUGCGG--CCGGCGuaGUGGu--UGAUg -5'
29605 3' -54.8 NC_006151.1 + 40027 0.7 0.787443
Target:  5'- aCCAGCGuCCGcGCCGC--CGCCGGggGCg -3'
miRNA:   3'- -GGUUGC-GGC-CGGCGuaGUGGUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 44683 0.68 0.856123
Target:  5'- aCGGCgGCCGGCgGCugaccgUACCAuCUGCu -3'
miRNA:   3'- gGUUG-CGGCCGgCGua----GUGGUuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 45790 0.66 0.9287
Target:  5'- cCCcuCGCCaccGCCGCAgCGCCugucACUGCc -3'
miRNA:   3'- -GGuuGCGGc--CGGCGUaGUGGu---UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 46800 0.66 0.943476
Target:  5'- cUCGAUGCgGcGCC-CGUCGCCcuCUGCc -3'
miRNA:   3'- -GGUUGCGgC-CGGcGUAGUGGuuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 47083 0.67 0.905594
Target:  5'- uCCGGCucCCGGCCccGCAcUCACCuccgcuccuGCUGCg -3'
miRNA:   3'- -GGUUGc-GGCCGG--CGU-AGUGGu--------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 47693 0.67 0.905594
Target:  5'- gCAGCGCCauuuGGCCggugcgGCGUC-CCGggaACUGCa -3'
miRNA:   3'- gGUUGCGG----CCGG------CGUAGuGGU---UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 48635 0.7 0.768675
Target:  5'- uCUAACGCCGccaCCGCcgCugCAGCaGCa -3'
miRNA:   3'- -GGUUGCGGCc--GGCGuaGugGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 48743 0.66 0.9287
Target:  5'- gCGGCGUCGGCgGCAaCAaCAGCcACg -3'
miRNA:   3'- gGUUGCGGCCGgCGUaGUgGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 48897 0.7 0.749412
Target:  5'- gCCuGCGCUGGCCGag-UACCGcggccGCUGCc -3'
miRNA:   3'- -GGuUGCGGCCGGCguaGUGGU-----UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 49131 0.7 0.759101
Target:  5'- cCCGACGCUGcCCGCGccCGCCcacGGCUGCc -3'
miRNA:   3'- -GGUUGCGGCcGGCGUa-GUGG---UUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 49342 0.66 0.938793
Target:  5'- gCCugcGCGCCGGacCCGCGcCGCCAcaaGgUGCu -3'
miRNA:   3'- -GGu--UGCGGCC--GGCGUaGUGGU---UgAUG- -5'
29605 3' -54.8 NC_006151.1 + 49589 0.66 0.927102
Target:  5'- gCCGGCGCCccGGCCaGCG-CGCUGccgguccuggcgguGCUGCg -3'
miRNA:   3'- -GGUUGCGG--CCGG-CGUaGUGGU--------------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 50338 0.74 0.54975
Target:  5'- cCCGGCGCCuGGCCGCGgccucccgccgcgucUCcGCCGGCggggGCg -3'
miRNA:   3'- -GGUUGCGG-CCGGCGU---------------AG-UGGUUGa---UG- -5'
29605 3' -54.8 NC_006151.1 + 50434 0.66 0.919924
Target:  5'- cCCugcGCGCCGGCggccugggcaccgccCGCGggcgcucgCGCCAGCgcgGCg -3'
miRNA:   3'- -GGu--UGCGGCCG---------------GCGUa-------GUGGUUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 50711 0.69 0.805641
Target:  5'- cUCGGCGaCGGCCGCcccggCGguCCAGCUGCc -3'
miRNA:   3'- -GGUUGCgGCCGGCGua---GU--GGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 50771 0.7 0.739618
Target:  5'- cUCGACGaCGGCCGCcccgacgCcCCAGCUGCc -3'
miRNA:   3'- -GGUUGCgGCCGGCGua-----GuGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 50887 0.75 0.467522
Target:  5'- cCCGGgGCCGGCCGCGcccccCGCCuccuguuGCUACc -3'
miRNA:   3'- -GGUUgCGGCCGGCGUa----GUGGu------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 51997 0.69 0.831714
Target:  5'- gCggUGCCGGCgugcagcuugCGCcgCGCCAGCUc- -3'
miRNA:   3'- gGuuGCGGCCG----------GCGuaGUGGUUGAug -5'
29605 3' -54.8 NC_006151.1 + 52821 0.76 0.448867
Target:  5'- gCCGGCGuuGGCCGCGa-GCCAGCg-- -3'
miRNA:   3'- -GGUUGCggCCGGCGUagUGGUUGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.