miRNA display CGI


Results 41 - 60 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 102648 0.72 0.679179
Target:  5'- gCGGCGCUcgaGGCCGCccaCGCCAACUuugACg -3'
miRNA:   3'- gGUUGCGG---CCGGCGua-GUGGUUGA---UG- -5'
29605 3' -54.8 NC_006151.1 + 38384 0.71 0.689405
Target:  5'- gCCGGCGCCGGCgGCGgcgggCGCCccCUcCg -3'
miRNA:   3'- -GGUUGCGGCCGgCGUa----GUGGuuGAuG- -5'
29605 3' -54.8 NC_006151.1 + 100095 0.71 0.689405
Target:  5'- gCCGGCGCCGgcGCCGCccUCGCUGGCgGCc -3'
miRNA:   3'- -GGUUGCGGC--CGGCGu-AGUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 82372 0.71 0.689405
Target:  5'- cCgGACGCCGGgCGCGUCgaagGCCAcgaGCUccGCg -3'
miRNA:   3'- -GgUUGCGGCCgGCGUAG----UGGU---UGA--UG- -5'
29605 3' -54.8 NC_006151.1 + 19885 0.71 0.689405
Target:  5'- -gAGCGCCagGGCCaGCAgCGCCAggaGCUGCg -3'
miRNA:   3'- ggUUGCGG--CCGG-CGUaGUGGU---UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 59830 0.71 0.689405
Target:  5'- gCGAUGUCGGCCGC--CACCGGCc-- -3'
miRNA:   3'- gGUUGCGGCCGGCGuaGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 100830 0.71 0.698566
Target:  5'- cCCGACGCCGuGCCGCucUCGgcgagcgUCAACgUGCg -3'
miRNA:   3'- -GGUUGCGGC-CGGCGu-AGU-------GGUUG-AUG- -5'
29605 3' -54.8 NC_006151.1 + 58136 0.71 0.699582
Target:  5'- gCCcGCGCCguacgcGGCCGCGUgcCACCGGCg-- -3'
miRNA:   3'- -GGuUGCGG------CCGGCGUA--GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 123924 0.71 0.699582
Target:  5'- -uGACGCgGGCCGCcucggccUCGCCGACg-- -3'
miRNA:   3'- ggUUGCGgCCGGCGu------AGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 109408 0.71 0.709701
Target:  5'- aCCAccuucGCgGCCGGCCGCAccacCGCCGGCc-- -3'
miRNA:   3'- -GGU-----UG-CGGCCGGCGUa---GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 109030 0.71 0.709701
Target:  5'- uCCAACGggcccaCCGGCgGCAgcagcagCAgCAGCUACa -3'
miRNA:   3'- -GGUUGC------GGCCGgCGUa------GUgGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 67863 0.71 0.709701
Target:  5'- gCCGGCGCCgagguGGCgCGCG-CGCCAGCccGCg -3'
miRNA:   3'- -GGUUGCGG-----CCG-GCGUaGUGGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 57535 0.71 0.709701
Target:  5'- uCCGGCG-CGGCCGCgggcacGUCGCCGAgcACg -3'
miRNA:   3'- -GGUUGCgGCCGGCG------UAGUGGUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 90221 0.71 0.709701
Target:  5'- -gGACGCCGGCCGagAUCGCgucgCGGCUGg -3'
miRNA:   3'- ggUUGCGGCCGGCg-UAGUG----GUUGAUg -5'
29605 3' -54.8 NC_006151.1 + 84307 0.71 0.718751
Target:  5'- gCAACGCgagcgcgaUGGCCGCGaccgugcgcggccUCGCCGAgUACg -3'
miRNA:   3'- gGUUGCG--------GCCGGCGU-------------AGUGGUUgAUG- -5'
29605 3' -54.8 NC_006151.1 + 98539 0.71 0.718751
Target:  5'- gCGACGacaccaCGGCCGCccUCACCGaggccggGCUGCg -3'
miRNA:   3'- gGUUGCg-----GCCGGCGu-AGUGGU-------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 81198 0.71 0.719753
Target:  5'- gUguACGCCgGGCCGCAguccgggCGCCGGCg-- -3'
miRNA:   3'- -GguUGCGG-CCGGCGUa------GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 129024 0.71 0.719753
Target:  5'- gCGGCGUCGGCCGCGcgCGCguACa-- -3'
miRNA:   3'- gGUUGCGGCCGGCGUa-GUGguUGaug -5'
29605 3' -54.8 NC_006151.1 + 135364 0.71 0.729729
Target:  5'- gCCGcGCGuuGGCCGCGUgCGCCGcgACcACg -3'
miRNA:   3'- -GGU-UGCggCCGGCGUA-GUGGU--UGaUG- -5'
29605 3' -54.8 NC_006151.1 + 61040 0.71 0.729729
Target:  5'- aCCAGCaGCCGGCgGUAggGCCGGCc-- -3'
miRNA:   3'- -GGUUG-CGGCCGgCGUagUGGUUGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.