miRNA display CGI


Results 21 - 40 of 279 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 105698 0.73 0.58641
Target:  5'- gCCGACGCCggcgcGGCCGCG-CGCCucGACgGCg -3'
miRNA:   3'- -GGUUGCGG-----CCGGCGUaGUGG--UUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 21458 0.73 0.596684
Target:  5'- cCCGGCGgCGuggucCCGCGUCGCCGGCUcggGCa -3'
miRNA:   3'- -GGUUGCgGCc----GGCGUAGUGGUUGA---UG- -5'
29605 3' -54.8 NC_006151.1 + 101921 0.73 0.606985
Target:  5'- gCGGCGCCGGCCccCGUgGCCGGCg-- -3'
miRNA:   3'- gGUUGCGGCCGGc-GUAgUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 77478 0.73 0.617305
Target:  5'- --cGCGcCCGGgaaCCGCgucGUCGCCAACUACg -3'
miRNA:   3'- gguUGC-GGCC---GGCG---UAGUGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 137052 0.73 0.617305
Target:  5'- cCCGGCGCCGGuguaCCGCGUggagcuggcgCACCGGCg-- -3'
miRNA:   3'- -GGUUGCGGCC----GGCGUA----------GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 140348 0.72 0.627636
Target:  5'- -uGAUGCUGGCuCGCAUCGCCcGCg-- -3'
miRNA:   3'- ggUUGCGGCCG-GCGUAGUGGuUGaug -5'
29605 3' -54.8 NC_006151.1 + 137350 0.72 0.627636
Target:  5'- cCCGAgGCCgacggcgacugGGCCGCG-CACCccuGCUACg -3'
miRNA:   3'- -GGUUgCGG-----------CCGGCGUaGUGGu--UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 140300 0.72 0.634871
Target:  5'- gCCGGCGCCGccugcgggacgugcGCUGCAUCGUCAcCUACa -3'
miRNA:   3'- -GGUUGCGGC--------------CGGCGUAGUGGUuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 57859 0.72 0.648301
Target:  5'- aCGGCGCUGGUCGCGcgcccCGCCGGCagACg -3'
miRNA:   3'- gGUUGCGGCCGGCGUa----GUGGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 89720 0.72 0.648301
Target:  5'- gCGGCGCCGGCCGCG--GCCGcggugguggGCgagACg -3'
miRNA:   3'- gGUUGCGGCCGGCGUagUGGU---------UGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 134210 0.72 0.658618
Target:  5'- gCAGCGCgggggCGGUCGCAcCACCAACg-- -3'
miRNA:   3'- gGUUGCG-----GCCGGCGUaGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 92160 0.72 0.658618
Target:  5'- aUCAugGCCgcGGCCGUgcgCGCCGACgGCg -3'
miRNA:   3'- -GGUugCGG--CCGGCGua-GUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 54743 0.72 0.658618
Target:  5'- gCCGAgGCCaugcGCgGCGUCACCAucauggACUACg -3'
miRNA:   3'- -GGUUgCGGc---CGgCGUAGUGGU------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 59436 0.72 0.668914
Target:  5'- cUCGGCGUCGGCCGCcgcCGCCGcgACcGCg -3'
miRNA:   3'- -GGUUGCGGCCGGCGua-GUGGU--UGaUG- -5'
29605 3' -54.8 NC_006151.1 + 93231 0.72 0.668914
Target:  5'- cCCAcucuGCGCCGGCCGC--CACCAu---- -3'
miRNA:   3'- -GGU----UGCGGCCGGCGuaGUGGUugaug -5'
29605 3' -54.8 NC_006151.1 + 69590 0.72 0.668914
Target:  5'- gCGACGagcuCGGCCGCGcggcgCACCAGCgACa -3'
miRNA:   3'- gGUUGCg---GCCGGCGUa----GUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 132133 0.72 0.668914
Target:  5'- cCCAgcucGCGCCGGCgGUGguugacggCGCgCAGCUGCg -3'
miRNA:   3'- -GGU----UGCGGCCGgCGUa-------GUG-GUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 117269 0.72 0.679179
Target:  5'- gCC-GCGCgCGGCCGC--CGCCGACaGCg -3'
miRNA:   3'- -GGuUGCG-GCCGGCGuaGUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 55232 0.72 0.679179
Target:  5'- aCGGCGCCGGCgCGCA--GCCGG-UGCa -3'
miRNA:   3'- gGUUGCGGCCG-GCGUagUGGUUgAUG- -5'
29605 3' -54.8 NC_006151.1 + 71784 0.72 0.679179
Target:  5'- gCGGCGggGGCUGCcgCACCAGCUGg -3'
miRNA:   3'- gGUUGCggCCGGCGuaGUGGUUGAUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.