miRNA display CGI


Results 21 - 40 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 23407 0.67 0.892601
Target:  5'- gCCAGCGCUGGUgGU--CGCCGGCc-- -3'
miRNA:   3'- -GGUUGCGGCCGgCGuaGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 26354 0.68 0.863092
Target:  5'- gCGGCgGCgGGCCGCGUCGgggcgcgcgucccCCGGCggGCg -3'
miRNA:   3'- gGUUG-CGgCCGGCGUAGU-------------GGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 31693 0.67 0.885753
Target:  5'- gCCGA-GCCGGCCGCGccauugggCGCCGG--GCg -3'
miRNA:   3'- -GGUUgCGGCCGGCGUa-------GUGGUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 31744 0.66 0.938793
Target:  5'- gCCcGCGCCGGggaCGCGcCugCGGCgGCg -3'
miRNA:   3'- -GGuUGCGGCCg--GCGUaGugGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 36563 0.77 0.412837
Target:  5'- gCAGCGgUGGCCGCAgCGCCGGCacgGCg -3'
miRNA:   3'- gGUUGCgGCCGGCGUaGUGGUUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 36656 0.66 0.943476
Target:  5'- cCCucCGCCGGaggggaCCGCGgucgucaccaUCACCAGCa-- -3'
miRNA:   3'- -GGuuGCGGCC------GGCGU----------AGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 36906 0.67 0.885753
Target:  5'- gCCGGCGCCGcGCCGgAgaggCGCCcuccGCcGCg -3'
miRNA:   3'- -GGUUGCGGC-CGGCgUa---GUGGu---UGaUG- -5'
29605 3' -54.8 NC_006151.1 + 37147 0.68 0.863856
Target:  5'- gCCcGCGCCgGGCCGCcaccGUCuccGCCGGCg-- -3'
miRNA:   3'- -GGuUGCGG-CCGGCG----UAG---UGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 37383 0.66 0.917633
Target:  5'- uCCGGCcgaCGGCCGCGUC-C--GCUACg -3'
miRNA:   3'- -GGUUGcg-GCCGGCGUAGuGguUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 37448 0.67 0.892601
Target:  5'- aCGACGUCcgccaGGCCGCG--GCCcGCUACc -3'
miRNA:   3'- gGUUGCGG-----CCGGCGUagUGGuUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 37643 0.67 0.909918
Target:  5'- gCCAGCGCCGGguccacgcgccccaCgGCcacggcuccuucAUCACCGGCaGCg -3'
miRNA:   3'- -GGUUGCGGCC--------------GgCG------------UAGUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 37943 0.71 0.729729
Target:  5'- gCAGC-CCGGCCGCGUgcccCGCgAGCUGg -3'
miRNA:   3'- gGUUGcGGCCGGCGUA----GUGgUUGAUg -5'
29605 3' -54.8 NC_006151.1 + 38271 0.68 0.871375
Target:  5'- gCCAACG-UGGCCGCggC-CCGGCUcGCc -3'
miRNA:   3'- -GGUUGCgGCCGGCGuaGuGGUUGA-UG- -5'
29605 3' -54.8 NC_006151.1 + 38384 0.71 0.689405
Target:  5'- gCCGGCGCCGGCgGCGgcgggCGCCccCUcCg -3'
miRNA:   3'- -GGUUGCGGCCGgCGUa----GUGGuuGAuG- -5'
29605 3' -54.8 NC_006151.1 + 38823 0.69 0.796618
Target:  5'- cCCGACGgCGGCuuccgcCGCGUC-CCGGCcgGCg -3'
miRNA:   3'- -GGUUGCgGCCG------GCGUAGuGGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 38972 0.67 0.885753
Target:  5'- uUCGAC-CCGGCCGCccuggcgcacAUCGCCGcgcGCcGCg -3'
miRNA:   3'- -GGUUGcGGCCGGCG----------UAGUGGU---UGaUG- -5'
29605 3' -54.8 NC_006151.1 + 39009 0.66 0.938793
Target:  5'- nCGGCGCCccgcuccGCCGCcgCGCCGcCUGg -3'
miRNA:   3'- gGUUGCGGc------CGGCGuaGUGGUuGAUg -5'
29605 3' -54.8 NC_006151.1 + 39251 0.67 0.885753
Target:  5'- cCCGACaUCGGCCGCcUCAacgcCCAggggguGCUGCu -3'
miRNA:   3'- -GGUUGcGGCCGGCGuAGU----GGU------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 39578 0.69 0.823197
Target:  5'- cCCGGgGCCGaGCCGCugCGCCu-CUGCc -3'
miRNA:   3'- -GGUUgCGGC-CGGCGuaGUGGuuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 39878 0.7 0.768675
Target:  5'- cCCGAgggccUGCCGGCCGaguugcgCGCCuuCUGCg -3'
miRNA:   3'- -GGUU-----GCGGCCGGCgua----GUGGuuGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.