miRNA display CGI


Results 21 - 40 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 134210 0.72 0.658618
Target:  5'- gCAGCGCgggggCGGUCGCAcCACCAACg-- -3'
miRNA:   3'- gGUUGCG-----GCCGGCGUaGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 133035 0.67 0.885753
Target:  5'- aCGGCGuuGGCCGCcucgAUCAgguCCAGCc-- -3'
miRNA:   3'- gGUUGCggCCGGCG----UAGU---GGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 132382 0.69 0.796618
Target:  5'- gCGACGUCGcgguaguagcGcCCGCG-CACCAGCUGCc -3'
miRNA:   3'- gGUUGCGGC----------C-GGCGUaGUGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 132133 0.72 0.668914
Target:  5'- cCCAgcucGCGCCGGCgGUGguugacggCGCgCAGCUGCg -3'
miRNA:   3'- -GGU----UGCGGCCGgCGUa-------GUG-GUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 130604 0.68 0.877956
Target:  5'- aCCAGCGCCucccaggcguccuGGUCGCGgcUCACgAGCg-- -3'
miRNA:   3'- -GGUUGCGG-------------CCGGCGU--AGUGgUUGaug -5'
29605 3' -54.8 NC_006151.1 + 130388 0.66 0.917633
Target:  5'- uCCAGCGCgaaGGCCaGCGccUCGCCcGCgagcGCg -3'
miRNA:   3'- -GGUUGCGg--CCGG-CGU--AGUGGuUGa---UG- -5'
29605 3' -54.8 NC_006151.1 + 130267 0.7 0.768675
Target:  5'- gCCGGCGCgcggccccgaGGCCGCGggcgcgCGCCGGCcgACg -3'
miRNA:   3'- -GGUUGCGg---------CCGGCGUa-----GUGGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 129957 0.7 0.759101
Target:  5'- gCGACGCCGGCaCGCGcgagCGCaCGGCg-- -3'
miRNA:   3'- gGUUGCGGCCG-GCGUa---GUG-GUUGaug -5'
29605 3' -54.8 NC_006151.1 + 129140 0.66 0.917633
Target:  5'- gCCAaagaGCGCCGG-CGCA-CACUGGCUc- -3'
miRNA:   3'- -GGU----UGCGGCCgGCGUaGUGGUUGAug -5'
29605 3' -54.8 NC_006151.1 + 129024 0.71 0.719753
Target:  5'- gCGGCGUCGGCCGCGcgCGCguACa-- -3'
miRNA:   3'- gGUUGCGGCCGGCGUa-GUGguUGaug -5'
29605 3' -54.8 NC_006151.1 + 128687 0.74 0.525704
Target:  5'- aCAACG-UGGCCGCGUaCGCCAGCa-- -3'
miRNA:   3'- gGUUGCgGCCGGCGUA-GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 128407 0.66 0.923288
Target:  5'- aCGACGgCGGCCGUGagGCCGcAC-ACg -3'
miRNA:   3'- gGUUGCgGCCGGCGUagUGGU-UGaUG- -5'
29605 3' -54.8 NC_006151.1 + 128100 0.69 0.805641
Target:  5'- ---cCGCUGGcCCGuCGUCGCCAGC-ACg -3'
miRNA:   3'- gguuGCGGCC-GGC-GUAGUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 128036 0.68 0.856123
Target:  5'- gCGACGCCcgcggcagcGGCgGCAgCGgCGGCUGCg -3'
miRNA:   3'- gGUUGCGG---------CCGgCGUaGUgGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 125989 0.68 0.856123
Target:  5'- aCAACguggugcuGCUGcGCgGCAUCGCCAACUu- -3'
miRNA:   3'- gGUUG--------CGGC-CGgCGUAGUGGUUGAug -5'
29605 3' -54.8 NC_006151.1 + 125923 0.67 0.885753
Target:  5'- uCCAGCGCCGcaaccaGCUGCAcgCGCuCAAguuCUACg -3'
miRNA:   3'- -GGUUGCGGC------CGGCGUa-GUG-GUU---GAUG- -5'
29605 3' -54.8 NC_006151.1 + 125461 0.74 0.535678
Target:  5'- cCCAGCGCCguggccacGGCCGCGcUCgGCCAGCg-- -3'
miRNA:   3'- -GGUUGCGG--------CCGGCGU-AG-UGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 125375 0.69 0.83087
Target:  5'- aCGACauGCUgGGCCGCAUCGCgGccgccuggugcgaGCUGCa -3'
miRNA:   3'- gGUUG--CGG-CCGGCGUAGUGgU-------------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 125269 0.66 0.938793
Target:  5'- cCCGAgcCGCCGGCCGuCAacggCACgGGgcacCUGCg -3'
miRNA:   3'- -GGUU--GCGGCCGGC-GUa---GUGgUU----GAUG- -5'
29605 3' -54.8 NC_006151.1 + 124076 0.66 0.923288
Target:  5'- gCCGuGCGCgCGGCCGCG--ACCGAgcgggaccgcuuCUACg -3'
miRNA:   3'- -GGU-UGCG-GCCGGCGUagUGGUU------------GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.