miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 141232 0.66 0.943476
Target:  5'- gCAGCGaCGGCUGCAcCACgGAggGCg -3'
miRNA:   3'- gGUUGCgGCCGGCGUaGUGgUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 140348 0.72 0.627636
Target:  5'- -uGAUGCUGGCuCGCAUCGCCcGCg-- -3'
miRNA:   3'- ggUUGCGGCCG-GCGUAGUGGuUGaug -5'
29605 3' -54.8 NC_006151.1 + 140300 0.72 0.634871
Target:  5'- gCCGGCGCCGccugcgggacgugcGCUGCAUCGUCAcCUACa -3'
miRNA:   3'- -GGUUGCGGC--------------CGGCGUAGUGGUuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 139708 0.68 0.878676
Target:  5'- aCAGCaGCagcaGGCCaGCAgcagCACCAGCgGCg -3'
miRNA:   3'- gGUUG-CGg---CCGG-CGUa---GUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 139638 0.66 0.943476
Target:  5'- uCCGGCGCCGGCgCGgggGUCG-CGGCggGCg -3'
miRNA:   3'- -GGUUGCGGCCG-GCg--UAGUgGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 138913 0.66 0.943476
Target:  5'- gCGAgcgUGCUcGCCGCcacgGUCAUCGGCUGCa -3'
miRNA:   3'- gGUU---GCGGcCGGCG----UAGUGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 138542 0.68 0.878676
Target:  5'- gCguACGCCGGCCugggCGCguACUACg -3'
miRNA:   3'- -GguUGCGGCCGGcguaGUGguUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 137492 0.66 0.9287
Target:  5'- aCGACGCC-GCC-C-UCGCCGACUuugGCg -3'
miRNA:   3'- gGUUGCGGcCGGcGuAGUGGUUGA---UG- -5'
29605 3' -54.8 NC_006151.1 + 137350 0.72 0.627636
Target:  5'- cCCGAgGCCgacggcgacugGGCCGCG-CACCccuGCUACg -3'
miRNA:   3'- -GGUUgCGG-----------CCGGCGUaGUGGu--UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 137212 0.68 0.840045
Target:  5'- uUCAACGcCCGGCUGgcCGUgACCAACa-- -3'
miRNA:   3'- -GGUUGC-GGCCGGC--GUAgUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 137149 0.68 0.848184
Target:  5'- gCGGCGCCggagauGGCCGCG-CACgAGCcgGCg -3'
miRNA:   3'- gGUUGCGG------CCGGCGUaGUGgUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 137052 0.73 0.617305
Target:  5'- cCCGGCGCCGGuguaCCGCGUggagcuggcgCACCGGCg-- -3'
miRNA:   3'- -GGUUGCGGCC----GGCGUA----------GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 136976 0.67 0.899216
Target:  5'- ----aGCUGGCCGCcgCGCCGGgcgGCg -3'
miRNA:   3'- gguugCGGCCGGCGuaGUGGUUga-UG- -5'
29605 3' -54.8 NC_006151.1 + 136932 0.66 0.923288
Target:  5'- gCAGCaGCCGGgCGCcgacggCGCCGucCUGCg -3'
miRNA:   3'- gGUUG-CGGCCgGCGua----GUGGUu-GAUG- -5'
29605 3' -54.8 NC_006151.1 + 136760 0.66 0.9287
Target:  5'- gCCucGCcCCGGCCaugggCGCCGGCUACg -3'
miRNA:   3'- -GGu-UGcGGCCGGcgua-GUGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 136152 0.74 0.565969
Target:  5'- cCCAgACGCUGGCCGCcuuccggCGCCu-CUACg -3'
miRNA:   3'- -GGU-UGCGGCCGGCGua-----GUGGuuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 136065 0.7 0.777187
Target:  5'- gCAACGCCGaguacgcGCCGgAgCGCCcGCUGCg -3'
miRNA:   3'- gGUUGCGGC-------CGGCgUaGUGGuUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 135393 0.67 0.892601
Target:  5'- nCGGCGuCCaGGCCGuCGUCGCCGGagGCc -3'
miRNA:   3'- gGUUGC-GG-CCGGC-GUAGUGGUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 135364 0.71 0.729729
Target:  5'- gCCGcGCGuuGGCCGCGUgCGCCGcgACcACg -3'
miRNA:   3'- -GGU-UGCggCCGGCGUA-GUGGU--UGaUG- -5'
29605 3' -54.8 NC_006151.1 + 135153 0.7 0.778126
Target:  5'- cCCAGC-CCGGCgggCGCGgcccggacgggCGCCGGCUGCc -3'
miRNA:   3'- -GGUUGcGGCCG---GCGUa----------GUGGUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.