miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 2104 0.68 0.878676
Target:  5'- cCCGA-GCgGGCCGCGggGCCGGCc-- -3'
miRNA:   3'- -GGUUgCGgCCGGCGUagUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 2125 0.67 0.911734
Target:  5'- nCCGuCGCC-GCCGCGgaCGCCGACg-- -3'
miRNA:   3'- -GGUuGCGGcCGGCGUa-GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 2355 0.67 0.911734
Target:  5'- gCAGCGCCGcGgCGCAgaaggCGCgCAACUcgGCc -3'
miRNA:   3'- gGUUGCGGC-CgGCGUa----GUG-GUUGA--UG- -5'
29605 3' -54.8 NC_006151.1 + 2635 0.67 0.911734
Target:  5'- cCCGGCGCgGG-UGC-UCACCGugUAg -3'
miRNA:   3'- -GGUUGCGgCCgGCGuAGUGGUugAUg -5'
29605 3' -54.8 NC_006151.1 + 2916 0.7 0.778126
Target:  5'- gCCGGCGCCGcGCCGC---GCCgAGCcGCg -3'
miRNA:   3'- -GGUUGCGGC-CGGCGuagUGG-UUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 2957 0.66 0.933868
Target:  5'- aCGGCGCCGGCgaaGCcgaggucccgCGCCGAgaGCa -3'
miRNA:   3'- gGUUGCGGCCGg--CGua--------GUGGUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 3886 0.68 0.839221
Target:  5'- gCCGGCGCCGGCgcugggaCGaCGagGCCgGGCUGCu -3'
miRNA:   3'- -GGUUGCGGCCG-------GC-GUagUGG-UUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 5075 0.66 0.938793
Target:  5'- gCCgAGgGCCgcggGGCCGCGgcgggCGCCGGCggagACg -3'
miRNA:   3'- -GG-UUgCGG----CCGGCGUa----GUGGUUGa---UG- -5'
29605 3' -54.8 NC_006151.1 + 5742 0.69 0.814503
Target:  5'- uCCGAgGCCGcGCCGCcggcccgggcUCACCGACc-- -3'
miRNA:   3'- -GGUUgCGGC-CGGCGu---------AGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 6295 0.67 0.892601
Target:  5'- gCGGCGgCGGCCGCcaggaGCUGGCUGa -3'
miRNA:   3'- gGUUGCgGCCGGCGuag--UGGUUGAUg -5'
29605 3' -54.8 NC_006151.1 + 10188 0.7 0.787443
Target:  5'- gCGuuCGCCGGUCGCGgcgcgggCGgCGGCUGCa -3'
miRNA:   3'- gGUu-GCGGCCGGCGUa------GUgGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 13471 0.67 0.892601
Target:  5'- cCCGcGgGCCGGaCCGCccCGCCGACUc- -3'
miRNA:   3'- -GGU-UgCGGCC-GGCGuaGUGGUUGAug -5'
29605 3' -54.8 NC_006151.1 + 15402 0.67 0.892601
Target:  5'- aCGACGCCGGCuCGgA-CACCAcCgucGCg -3'
miRNA:   3'- gGUUGCGGCCG-GCgUaGUGGUuGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 16915 0.7 0.743548
Target:  5'- cCCGGCGCCGGCgCaCGUCGCCccgggucacgaucugGGCaUGCa -3'
miRNA:   3'- -GGUUGCGGCCG-GcGUAGUGG---------------UUG-AUG- -5'
29605 3' -54.8 NC_006151.1 + 17488 0.7 0.739618
Target:  5'- gUCGGCGgCGcGCCGCugcugCACCAGCgACg -3'
miRNA:   3'- -GGUUGCgGC-CGGCGua---GUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 17929 0.66 0.917633
Target:  5'- gCGACGCCcaucaggcagcGGCgGCGUCuCCGGCg-- -3'
miRNA:   3'- gGUUGCGG-----------CCGgCGUAGuGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 19302 0.66 0.917633
Target:  5'- gCGGCGCgGGCgGCcgGUCGCCcACcGCc -3'
miRNA:   3'- gGUUGCGgCCGgCG--UAGUGGuUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 19885 0.71 0.689405
Target:  5'- -gAGCGCCagGGCCaGCAgCGCCAggaGCUGCg -3'
miRNA:   3'- ggUUGCGG--CCGG-CGUaGUGGU---UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 20212 0.66 0.9287
Target:  5'- gCAGCGCCgGGCCGCGcaGgCGACc-- -3'
miRNA:   3'- gGUUGCGG-CCGGCGUagUgGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 21458 0.73 0.596684
Target:  5'- cCCGGCGgCGuggucCCGCGUCGCCGGCUcggGCa -3'
miRNA:   3'- -GGUUGCgGCc----GGCGUAGUGGUUGA---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.