Results 41 - 60 of 676 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29605 | 5' | -62.7 | NC_006151.1 | + | 40244 | 0.66 | 0.65732 |
Target: 5'- uCCGCuGAgCGGGGCGCCcccuCGGCcCgGCc -3' miRNA: 3'- -GGCG-CUgGUCCUGCGGc---GCCGcGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 58374 | 0.66 | 0.65732 |
Target: 5'- gUCGUGAUCucGACGgagagCGCGGCGCaGCc -3' miRNA: 3'- -GGCGCUGGucCUGCg----GCGCCGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 117021 | 0.66 | 0.65732 |
Target: 5'- cCCGCGGgcCCGGGcCGCagGCGGUaccagccgaaGCUGg -3' miRNA: 3'- -GGCGCU--GGUCCuGCGg-CGCCG----------CGACg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 117177 | 0.66 | 0.65732 |
Target: 5'- aCGCGguagaagggccGCCggGGGGCGUCGUaguaguagacgGGCGCgGCg -3' miRNA: 3'- gGCGC-----------UGG--UCCUGCGGCG-----------CCGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 10506 | 0.66 | 0.65732 |
Target: 5'- cCCGCcGCCgcAGGcGCGuCCcCGGCGCggGCg -3' miRNA: 3'- -GGCGcUGG--UCC-UGC-GGcGCCGCGa-CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 56425 | 0.66 | 0.654414 |
Target: 5'- uUCGCGGCCcaccucagcccgcucGACGagaCGCGcGUGCUGCc -3' miRNA: 3'- -GGCGCUGGuc-------------CUGCg--GCGC-CGCGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 114221 | 0.66 | 0.654414 |
Target: 5'- aCCGCGuguuccugGCCucGGugGCCGCGcgggaccccucggaGCGC-GCc -3' miRNA: 3'- -GGCGC--------UGGu-CCugCGGCGC--------------CGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 68167 | 0.66 | 0.64763 |
Target: 5'- gCCGCcACCAGcGCGUagGCGGCGUcGUu -3' miRNA: 3'- -GGCGcUGGUCcUGCGg-CGCCGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 95183 | 0.66 | 0.64763 |
Target: 5'- gUCGUGugCAGGcccugcaggccgAUGCCcaGCGaGCgGCUGCg -3' miRNA: 3'- -GGCGCugGUCC------------UGCGG--CGC-CG-CGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 137295 | 0.66 | 0.64763 |
Target: 5'- -gGCGGCCAugcgcGGGuucCGCCGC-GCGgUGCu -3' miRNA: 3'- ggCGCUGGU-----CCU---GCGGCGcCGCgACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 2164 | 0.66 | 0.64763 |
Target: 5'- cCCGUccucGCCGGGGCcgGCCcCGGCGCccgagGCc -3' miRNA: 3'- -GGCGc---UGGUCCUG--CGGcGCCGCGa----CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 37880 | 0.66 | 0.64763 |
Target: 5'- cCCGCG-CCGGGgagGCGaCCGUcgaGGCccuCUGCg -3' miRNA: 3'- -GGCGCuGGUCC---UGC-GGCG---CCGc--GACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 43682 | 0.66 | 0.64763 |
Target: 5'- -gGCGACgaGGGGC-CCGcCGGCGCg-- -3' miRNA: 3'- ggCGCUGg-UCCUGcGGC-GCCGCGacg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 56093 | 0.66 | 0.64763 |
Target: 5'- cCUGCGACgAGuacCGCCGC--CGCUGCc -3' miRNA: 3'- -GGCGCUGgUCcu-GCGGCGccGCGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 81890 | 0.66 | 0.64763 |
Target: 5'- gCCgGCG-CCgAGGcGCGCCggucGCGGCGCgccGCc -3' miRNA: 3'- -GG-CGCuGG-UCC-UGCGG----CGCCGCGa--CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 85506 | 0.66 | 0.64763 |
Target: 5'- gCGCGccacggugaacACCAucacGGGCcugcugcuGCUGCGGCGcCUGCu -3' miRNA: 3'- gGCGC-----------UGGU----CCUG--------CGGCGCCGC-GACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 94757 | 0.66 | 0.64763 |
Target: 5'- gCGCGGaaaCAGG-CGCCGCaGCGUc-- -3' miRNA: 3'- gGCGCUg--GUCCuGCGGCGcCGCGacg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 121747 | 0.66 | 0.64763 |
Target: 5'- aCGUGuuucACUGGaGAUGCUGaaGCGCUGCg -3' miRNA: 3'- gGCGC----UGGUC-CUGCGGCgcCGCGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 138908 | 0.66 | 0.64763 |
Target: 5'- aCGCGGCgAGcGugcuCGCCGCcacGGUcaucgGCUGCa -3' miRNA: 3'- gGCGCUGgUC-Cu---GCGGCG---CCG-----CGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 70783 | 0.66 | 0.654414 |
Target: 5'- gCGCGccuccggcACCGGcGugGCCGUcgugggcagcuaccGGCGCaGCu -3' miRNA: 3'- gGCGC--------UGGUC-CugCGGCG--------------CCGCGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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