miRNA display CGI


Results 41 - 60 of 676 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 7108 0.72 0.297872
Target:  5'- uCUGCGGCCAucuugGCCGCGGCGC-GCc -3'
miRNA:   3'- -GGCGCUGGUccug-CGGCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 8078 0.71 0.368969
Target:  5'- -gGCGA-CGGGGCGUgGCGGgGCgugGCa -3'
miRNA:   3'- ggCGCUgGUCCUGCGgCGCCgCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 8259 0.67 0.545527
Target:  5'- gCGCG-CCGGGACGCCccuccgggggaaagaGUguccccgcgcgGGCGCcGCg -3'
miRNA:   3'- gGCGCuGGUCCUGCGG---------------CG-----------CCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 8345 0.69 0.459582
Target:  5'- aUCGCGcCCGccGGACGCgGaGGCGCgagGCc -3'
miRNA:   3'- -GGCGCuGGU--CCUGCGgCgCCGCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 9035 0.71 0.346469
Target:  5'- cCCGCccGCCGGGGCGCCccgcgugcuccgGgGGCGCcgGCc -3'
miRNA:   3'- -GGCGc-UGGUCCUGCGG------------CgCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 9487 0.68 0.486291
Target:  5'- cCCGCGGCCGcGGCGUgggagaGCGGgGCgUGUg -3'
miRNA:   3'- -GGCGCUGGUcCUGCGg-----CGCCgCG-ACG- -5'
29605 5' -62.7 NC_006151.1 + 9896 0.67 0.570274
Target:  5'- cCCgGCGGuCCGGGAagaaaGCCcCGGCGCcucggGCc -3'
miRNA:   3'- -GG-CGCU-GGUCCUg----CGGcGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 10029 0.69 0.450853
Target:  5'- gCCGCGGCCAGGAgGaaaaaCGGgGgaGCg -3'
miRNA:   3'- -GGCGCUGGUCCUgCggc--GCCgCgaCG- -5'
29605 5' -62.7 NC_006151.1 + 10198 0.69 0.450853
Target:  5'- gUCGCGGCgCGGGcgGCgGCUGCagaGGCgGCUGCg -3'
miRNA:   3'- -GGCGCUG-GUCC--UG-CGGCG---CCG-CGACG- -5'
29605 5' -62.7 NC_006151.1 + 10506 0.66 0.65732
Target:  5'- cCCGCcGCCgcAGGcGCGuCCcCGGCGCggGCg -3'
miRNA:   3'- -GGCGcUGG--UCC-UGC-GGcGCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 10695 0.67 0.589496
Target:  5'- cCCGUGAUCAcGuucGCGCacCGCGGCGCcaGCa -3'
miRNA:   3'- -GGCGCUGGUcC---UGCG--GCGCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 10910 0.68 0.495358
Target:  5'- gCGCgGACCGGGgucgggcccacgGCGCCGagggugGGCGC-GCg -3'
miRNA:   3'- gGCG-CUGGUCC------------UGCGGCg-----CCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 11213 0.66 0.624342
Target:  5'- gCGCGuCCGGGAaggcuucucccggGCCGCGaGgGCcGCg -3'
miRNA:   3'- gGCGCuGGUCCUg------------CGGCGC-CgCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 11304 0.7 0.408632
Target:  5'- cCCGCucucCCGGGcCGCCGCGauaccGCGCggGCg -3'
miRNA:   3'- -GGCGcu--GGUCCuGCGGCGC-----CGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 11342 0.67 0.579868
Target:  5'- aCCGCG--CGGGcCGcCCGCGgGCGCUaccGCg -3'
miRNA:   3'- -GGCGCugGUCCuGC-GGCGC-CGCGA---CG- -5'
29605 5' -62.7 NC_006151.1 + 11692 0.66 0.618522
Target:  5'- aCGgGGCCgcGGGACGgCGC-GUGCgGCg -3'
miRNA:   3'- gGCgCUGG--UCCUGCgGCGcCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 13182 0.82 0.066577
Target:  5'- gCCGCGGCCgucucGGGGC-CCGCGGCGCcGCc -3'
miRNA:   3'- -GGCGCUGG-----UCCUGcGGCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 15075 0.68 0.522066
Target:  5'- gCGCGGCCcccuGGCGCCccgacacGCGGCGCcucgggGCc -3'
miRNA:   3'- gGCGCUGGuc--CUGCGG-------CGCCGCGa-----CG- -5'
29605 5' -62.7 NC_006151.1 + 17097 0.77 0.140692
Target:  5'- gCGCGcCCgucGGGGCGCCgggggcuccggcgGCGGUGCUGCg -3'
miRNA:   3'- gGCGCuGG---UCCUGCGG-------------CGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 17143 0.66 0.637929
Target:  5'- -gGCGGCCAGGAgcaccugguCGCagaggucgGCGGCGCc-- -3'
miRNA:   3'- ggCGCUGGUCCU---------GCGg-------CGCCGCGacg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.