miRNA display CGI


Results 21 - 40 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 4217 0.77 0.151724
Target:  5'- -gGCGGCCGGGGCGCgGgCGGgCGCggGCa -3'
miRNA:   3'- ggCGCUGGUCCUGCGgC-GCC-GCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 4280 0.71 0.339191
Target:  5'- gCCGCGgcagGCCAGGACGCa--GGCGUccGCc -3'
miRNA:   3'- -GGCGC----UGGUCCUGCGgcgCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 4323 0.81 0.073707
Target:  5'- aCGCGGCCGGGcuGCGCgGCGGCGaagGCg -3'
miRNA:   3'- gGCGCUGGUCC--UGCGgCGCCGCga-CG- -5'
29605 5' -62.7 NC_006151.1 + 4390 0.69 0.450853
Target:  5'- cCC-CGGCgCGGGGguCCGCGGCGCgGCc -3'
miRNA:   3'- -GGcGCUG-GUCCUgcGGCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 4604 0.73 0.260564
Target:  5'- gCCGUGGCCguGGGGCGCguggaccCGGCGCUGg -3'
miRNA:   3'- -GGCGCUGG--UCCUGCGgc-----GCCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 4672 0.72 0.297872
Target:  5'- uCCGCGgguucugcaGCCAGGAcauggccuCGCCgGCGGCcccGCUGUa -3'
miRNA:   3'- -GGCGC---------UGGUCCU--------GCGG-CGCCG---CGACG- -5'
29605 5' -62.7 NC_006151.1 + 4794 0.68 0.495358
Target:  5'- gCCGCGGCgCGGuagcGgGCCGCGGC-CUGg -3'
miRNA:   3'- -GGCGCUG-GUCc---UgCGGCGCCGcGACg -5'
29605 5' -62.7 NC_006151.1 + 5033 0.79 0.102273
Target:  5'- gCCGgGGCCGGGGagGCCGCGGCGgaGg -3'
miRNA:   3'- -GGCgCUGGUCCUg-CGGCGCCGCgaCg -5'
29605 5' -62.7 NC_006151.1 + 5075 0.69 0.459582
Target:  5'- gCCGagGGCCGcGGG-GCCGCGGCGg-GCg -3'
miRNA:   3'- -GGCg-CUGGU-CCUgCGGCGCCGCgaCG- -5'
29605 5' -62.7 NC_006151.1 + 5249 0.67 0.570274
Target:  5'- gCgGCGGCgGGGGC-CCGgGGgGCggaggGCg -3'
miRNA:   3'- -GgCGCUGgUCCUGcGGCgCCgCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 5332 0.81 0.083443
Target:  5'- gCCGCGGCCgcggcggAGGGCGCCcucuccggcGCGGCGCcgGCg -3'
miRNA:   3'- -GGCGCUGG-------UCCUGCGG---------CGCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 5563 0.7 0.408632
Target:  5'- cUCGuCGAgCAGGG-GCuCGCGGUGCUGg -3'
miRNA:   3'- -GGC-GCUgGUCCUgCG-GCGCCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 5602 0.69 0.459582
Target:  5'- aCCGCGGuCCccuccggcggagGGGGCGCCGCcGcCGCcggGCg -3'
miRNA:   3'- -GGCGCU-GG------------UCCUGCGGCGcC-GCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 5688 0.72 0.32497
Target:  5'- cCCGcCGugCcGG-CGCUGCGGCcaccGCUGCu -3'
miRNA:   3'- -GGC-GCugGuCCuGCGGCGCCG----CGACG- -5'
29605 5' -62.7 NC_006151.1 + 5786 0.7 0.416879
Target:  5'- cUCGCGG--GGGACcaucuCCGCGGgGCUGCc -3'
miRNA:   3'- -GGCGCUggUCCUGc----GGCGCCgCGACG- -5'
29605 5' -62.7 NC_006151.1 + 5821 0.66 0.618522
Target:  5'- gCCGgGagaGCCggaggAGGAgGCCGgGGagGCUGCg -3'
miRNA:   3'- -GGCgC---UGG-----UCCUgCGGCgCCg-CGACG- -5'
29605 5' -62.7 NC_006151.1 + 5868 0.71 0.359097
Target:  5'- -aGCGcCCGGGGcCGCCGgGGgccccggccucugcCGCUGCg -3'
miRNA:   3'- ggCGCuGGUCCU-GCGGCgCC--------------GCGACG- -5'
29605 5' -62.7 NC_006151.1 + 5946 0.66 0.628224
Target:  5'- cCCGgGACCGGGGC-CCGaggacgaGGUGaccgUGCu -3'
miRNA:   3'- -GGCgCUGGUCCUGcGGCg------CCGCg---ACG- -5'
29605 5' -62.7 NC_006151.1 + 6142 0.69 0.449985
Target:  5'- gCCGCGGCCgcgAGGACGgCggccucggccucgGCGGCGUcGUc -3'
miRNA:   3'- -GGCGCUGG---UCCUGCgG-------------CGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 6231 0.68 0.495358
Target:  5'- gCCGCGgcGCCGGGAgcccuggcugcCGCCGuCGGgGCcggacGCg -3'
miRNA:   3'- -GGCGC--UGGUCCU-----------GCGGC-GCCgCGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.