miRNA display CGI


Results 21 - 40 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 137885 0.68 0.529533
Target:  5'- cCUGCGGCUgcccuucuucgccaAGGuCGaCgGCGGCgGCUGCc -3'
miRNA:   3'- -GGCGCUGG--------------UCCuGC-GgCGCCG-CGACG- -5'
29605 5' -62.7 NC_006151.1 + 137761 0.71 0.361359
Target:  5'- uCCGCGGCCuGG-CGCgCGUGcuccagcaggccGUGCUGCu -3'
miRNA:   3'- -GGCGCUGGuCCuGCG-GCGC------------CGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 137483 0.66 0.598185
Target:  5'- cCUGgGACgAcGACGCCGCccucgccgacuuuGGCGCcGCg -3'
miRNA:   3'- -GGCgCUGgUcCUGCGGCG-------------CCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 137295 0.66 0.64763
Target:  5'- -gGCGGCCAugcgcGGGuucCGCCGC-GCGgUGCu -3'
miRNA:   3'- ggCGCUGGU-----CCU---GCGGCGcCGCgACG- -5'
29605 5' -62.7 NC_006151.1 + 137110 0.71 0.368969
Target:  5'- gCCGgGgacGCCugGGGGCGCgCGaCGGCGCgGCg -3'
miRNA:   3'- -GGCgC---UGG--UCCUGCG-GC-GCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 137084 0.67 0.579868
Target:  5'- aCCgGCG-CCAGGcCuUCGCGGUGCUGn -3'
miRNA:   3'- -GG-CGCuGGUCCuGcGGCGCCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 136984 0.72 0.291377
Target:  5'- gCCGCG-CCGGGcggcgggcGCGCgCGCacGGCGCUGg -3'
miRNA:   3'- -GGCGCuGGUCC--------UGCG-GCG--CCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 136934 0.72 0.297872
Target:  5'- -aGCaGCCGGG-CGCCGaCGGCGCcguccUGCg -3'
miRNA:   3'- ggCGcUGGUCCuGCGGC-GCCGCG-----ACG- -5'
29605 5' -62.7 NC_006151.1 + 136813 0.73 0.272559
Target:  5'- cUCGCGGCCGacGCGCCGCgcgGGCuCUGCg -3'
miRNA:   3'- -GGCGCUGGUccUGCGGCG---CCGcGACG- -5'
29605 5' -62.7 NC_006151.1 + 136602 0.67 0.55121
Target:  5'- uCCGCGagcaccuggacGCCGucaacgucacGGACcCCGCGGCGCccgugggGCg -3'
miRNA:   3'- -GGCGC-----------UGGU----------CCUGcGGCGCCGCGa------CG- -5'
29605 5' -62.7 NC_006151.1 + 136427 0.68 0.483587
Target:  5'- cCCGCGGCgGcGcACGCCGCGcgcuacgucgacgaGCGCgUGCg -3'
miRNA:   3'- -GGCGCUGgUcC-UGCGGCGC--------------CGCG-ACG- -5'
29605 5' -62.7 NC_006151.1 + 136346 0.83 0.060114
Target:  5'- cCCaGCGGCCuGGACcCCGCGGgGCUGCu -3'
miRNA:   3'- -GG-CGCUGGuCCUGcGGCGCCgCGACG- -5'
29605 5' -62.7 NC_006151.1 + 136273 0.69 0.441357
Target:  5'- cCCGCGGCCGGccuacGAC-CUGCGGgcccucaaggaccUGCUGCu -3'
miRNA:   3'- -GGCGCUGGUC-----CUGcGGCGCC-------------GCGACG- -5'
29605 5' -62.7 NC_006151.1 + 136103 0.75 0.21185
Target:  5'- aUCGCGGUCGGG-CGCCGCGG-GCUGa -3'
miRNA:   3'- -GGCGCUGGUCCuGCGGCGCCgCGACg -5'
29605 5' -62.7 NC_006151.1 + 136054 0.66 0.628224
Target:  5'- cCCGCGcACCGGcaACGCCGaguacgcgcCGGagcgccCGCUGCg -3'
miRNA:   3'- -GGCGC-UGGUCc-UGCGGC---------GCC------GCGACG- -5'
29605 5' -62.7 NC_006151.1 + 135908 0.7 0.408632
Target:  5'- gCCGCGACCccGGCgGUCGUGcGCGC-GCu -3'
miRNA:   3'- -GGCGCUGGucCUG-CGGCGC-CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 135667 0.67 0.55121
Target:  5'- uCCGCGuCCuGuACGCCaCGGacgGCUGCg -3'
miRNA:   3'- -GGCGCuGGuCcUGCGGcGCCg--CGACG- -5'
29605 5' -62.7 NC_006151.1 + 135384 0.68 0.523929
Target:  5'- gCCGCGACCAcGGcguccaggccgucguCGCCggaggccucGUGGCGCgccagGCa -3'
miRNA:   3'- -GGCGCUGGU-CCu--------------GCGG---------CGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 135166 0.66 0.628224
Target:  5'- gCGCGGCCcGGACgGgCGCcGGCuGCcGCc -3'
miRNA:   3'- gGCGCUGGuCCUG-CgGCG-CCG-CGaCG- -5'
29605 5' -62.7 NC_006151.1 + 134999 0.66 0.628224
Target:  5'- gCGCGucuugGCgGGGGCGCgGgGGgGCaGCa -3'
miRNA:   3'- gGCGC-----UGgUCCUGCGgCgCCgCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.