miRNA display CGI


Results 21 - 40 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 57457 0.79 0.107505
Target:  5'- cCCGCGucgGCCAGGugccGCGCCGCGGCGgcCUcGCa -3'
miRNA:   3'- -GGCGC---UGGUCC----UGCGGCGCCGC--GA-CG- -5'
29605 5' -62.7 NC_006151.1 + 121414 0.79 0.110214
Target:  5'- gCGCgGGCgGGGACGUCGCGGgGCUcGCg -3'
miRNA:   3'- gGCG-CUGgUCCUGCGGCGCCgCGA-CG- -5'
29605 5' -62.7 NC_006151.1 + 84614 0.79 0.112988
Target:  5'- gCGCGccGCCGcgcGGcCGCCGCGGCGCUGg -3'
miRNA:   3'- gGCGC--UGGU---CCuGCGGCGCCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 99555 0.79 0.112988
Target:  5'- aCGUGGgCGcGGCGCgCGCGGCGCUGCu -3'
miRNA:   3'- gGCGCUgGUcCUGCG-GCGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 119057 0.79 0.116691
Target:  5'- gCCGCGGCCGccuccgcGGGCgcgcccgucucgcagGCCGCGGCGCUcgGCg -3'
miRNA:   3'- -GGCGCUGGU-------CCUG---------------CGGCGCCGCGA--CG- -5'
29605 5' -62.7 NC_006151.1 + 77972 0.78 0.121704
Target:  5'- cCCGCG-CCGGuACGCCgaGCGcGCGCUGCg -3'
miRNA:   3'- -GGCGCuGGUCcUGCGG--CGC-CGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 25404 0.78 0.121704
Target:  5'- aCCGCGACgGGGGCGCCGCcgccccacGCGC-GCc -3'
miRNA:   3'- -GGCGCUGgUCCUGCGGCGc-------CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 99103 0.78 0.124745
Target:  5'- gCGCacgGACCAGGGCG-UGCuGGCGCUGCu -3'
miRNA:   3'- gGCG---CUGGUCCUGCgGCG-CCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 112586 0.78 0.127543
Target:  5'- cCCGCGGgCuucguggAGGcCGCCGCGGCGCcGCu -3'
miRNA:   3'- -GGCGCUgG-------UCCuGCGGCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 103777 0.78 0.134298
Target:  5'- nCGCGAgUCGGaGCGCUgGCGGCGCUGCa -3'
miRNA:   3'- gGCGCU-GGUCcUGCGG-CGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 85151 0.78 0.134298
Target:  5'- aCCGCGugCGGcagggggccGGCGCCGCGgGCGCcGCc -3'
miRNA:   3'- -GGCGCugGUC---------CUGCGGCGC-CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 130716 0.77 0.137292
Target:  5'- -gGCGGCCcgGGGGCccgcgcgGCCGCGGCGCaGCg -3'
miRNA:   3'- ggCGCUGG--UCCUG-------CGGCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 17097 0.77 0.140692
Target:  5'- gCGCGcCCgucGGGGCGCCgggggcuccggcgGCGGUGCUGCg -3'
miRNA:   3'- gGCGCuGG---UCCUGCGG-------------CGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 103463 0.77 0.141036
Target:  5'- cCCGUG-CCGGGcACGgugcUCGCGGCGCUGUg -3'
miRNA:   3'- -GGCGCuGGUCC-UGC----GGCGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 131776 0.77 0.14452
Target:  5'- aCCGCGGCCGcGGGCGCCGCcgucgucaGCGC-GCc -3'
miRNA:   3'- -GGCGCUGGU-CCUGCGGCGc-------CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 72252 0.77 0.148082
Target:  5'- cCCGCGGCCGccGACGCCgaGCGGCGUgGCc -3'
miRNA:   3'- -GGCGCUGGUc-CUGCGG--CGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 104273 0.77 0.148082
Target:  5'- gCGCGGCggCGGGccCGCCGCugcaGGCGCUGCa -3'
miRNA:   3'- gGCGCUG--GUCCu-GCGGCG----CCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 4217 0.77 0.151724
Target:  5'- -gGCGGCCGGGGCGCgGgCGGgCGCggGCa -3'
miRNA:   3'- ggCGCUGGUCCUGCGgC-GCC-GCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 113030 0.77 0.155447
Target:  5'- aCGCGugcGCCGGGugcuGCGCgGCGGCGgaGCg -3'
miRNA:   3'- gGCGC---UGGUCC----UGCGgCGCCGCgaCG- -5'
29605 5' -62.7 NC_006151.1 + 52486 0.77 0.155447
Target:  5'- gCCGUGACgGccucGGGCGCCaGCccggGGCGCUGCa -3'
miRNA:   3'- -GGCGCUGgU----CCUGCGG-CG----CCGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.