miRNA display CGI


Results 1 - 20 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 142894 0.67 0.579868
Target:  5'- -gGCGaACCcucgcGGGCGCCacCGGCGCggGCa -3'
miRNA:   3'- ggCGC-UGGu----CCUGCGGc-GCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 142294 0.67 0.570274
Target:  5'- aC-CGGCCGGGACGagaGCGaGCGCcGUa -3'
miRNA:   3'- gGcGCUGGUCCUGCgg-CGC-CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 142240 0.66 0.627254
Target:  5'- gUCGCGACgAGG-CGUcggucauCGCGGCGaggaGCg -3'
miRNA:   3'- -GGCGCUGgUCCuGCG-------GCGCCGCga--CG- -5'
29605 5' -62.7 NC_006151.1 + 141988 0.67 0.570274
Target:  5'- -gGCGGcCCGGGAaaaaGagCGCGGCGUgggGCg -3'
miRNA:   3'- ggCGCU-GGUCCUg---Cg-GCGCCGCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 141697 0.68 0.522997
Target:  5'- aCgGCGGCUGGcGGCGgaCGCGGUGCccgggGCg -3'
miRNA:   3'- -GgCGCUGGUC-CUGCg-GCGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 141620 0.72 0.311197
Target:  5'- gCCGgGAUCGGGcgggucgcugcCGCgGCGGCGCgGCg -3'
miRNA:   3'- -GGCgCUGGUCCu----------GCGgCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 140281 0.68 0.513714
Target:  5'- cCCGuCGACgAGcucgugcgccGGCGCCGCcugcgggacGuGCGCUGCa -3'
miRNA:   3'- -GGC-GCUGgUC----------CUGCGGCG---------C-CGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 140200 0.69 0.433673
Target:  5'- aUCGUGGCCAccGCGgggGCGGUGCUGCa -3'
miRNA:   3'- -GGCGCUGGUccUGCgg-CGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 140047 0.66 0.608829
Target:  5'- gUGCGGCC-GcACGCCaccgagGCGGCGC-GCg -3'
miRNA:   3'- gGCGCUGGuCcUGCGG------CGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 139656 0.7 0.376687
Target:  5'- gUCGCGGCgGGcGCGCCGCccgacaGGCcCUGCg -3'
miRNA:   3'- -GGCGCUGgUCcUGCGGCG------CCGcGACG- -5'
29605 5' -62.7 NC_006151.1 + 139622 0.7 0.376687
Target:  5'- gCGCGGCUGGGG-GCCaucCGGCGCcgGCg -3'
miRNA:   3'- gGCGCUGGUCCUgCGGc--GCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 139324 0.74 0.21685
Target:  5'- aCCGUGcucGCCGGGAucuuUGCCaaGGCGCUGUa -3'
miRNA:   3'- -GGCGC---UGGUCCU----GCGGcgCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 139287 0.69 0.442216
Target:  5'- aCGCGccGCCcucGGCGuCUGCGGCGCgUGCu -3'
miRNA:   3'- gGCGC--UGGuc-CUGC-GGCGCCGCG-ACG- -5'
29605 5' -62.7 NC_006151.1 + 139194 0.7 0.408632
Target:  5'- -gGCGGUCGGGGCGCUggagcuccugGCGGCgacGCUGCc -3'
miRNA:   3'- ggCGCUGGUCCUGCGG----------CGCCG---CGACG- -5'
29605 5' -62.7 NC_006151.1 + 138908 0.66 0.64763
Target:  5'- aCGCGGCgAGcGugcuCGCCGCcacGGUcaucgGCUGCa -3'
miRNA:   3'- gGCGCUGgUC-Cu---GCGGCG---CCG-----CGACG- -5'
29605 5' -62.7 NC_006151.1 + 138678 0.69 0.442216
Target:  5'- aCGUGGCCcccaacgagacGGACGCgcugaGCccGGCGCUGCg -3'
miRNA:   3'- gGCGCUGGu----------CCUGCGg----CG--CCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 138613 0.76 0.167118
Target:  5'- gCCGCucGGCgAGGACGCCGCcgggGGCGC-GCc -3'
miRNA:   3'- -GGCG--CUGgUCCUGCGGCG----CCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 138184 0.7 0.400488
Target:  5'- aCGUGGCCAuGGCGCC-CG-UGCUGCg -3'
miRNA:   3'- gGCGCUGGUcCUGCGGcGCcGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 138128 0.7 0.408632
Target:  5'- nCGCGGCCuggccguGGACGCgGaggacCGGCGC-GCg -3'
miRNA:   3'- gGCGCUGGu------CCUGCGgC-----GCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 138082 0.71 0.346469
Target:  5'- aCCGCGAggccuucuucgcCCGGcGcACGCCGCuGGCggacauGCUGCg -3'
miRNA:   3'- -GGCGCU------------GGUC-C-UGCGGCG-CCG------CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.