Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29607 | 3' | -52.1 | NC_006151.1 | + | 80904 | 0.68 | 0.941926 |
Target: 5'- aUCAgggCCUUGACGUCGccGCCgugCAGCGu -3' miRNA: 3'- aGGUa--GGAGUUGCAGU--UGGa--GUCGCu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 71856 | 0.68 | 0.946086 |
Target: 5'- aCCGUCCUgcgccccCAGCGUCAGCagguucgggaUgAGCGAc -3' miRNA: 3'- aGGUAGGA-------GUUGCAGUUGg---------AgUCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 3963 | 0.68 | 0.946536 |
Target: 5'- cCCGggCCgc-GCGgCGGCCUCGGCGAg -3' miRNA: 3'- aGGUa-GGaguUGCaGUUGGAGUCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 11854 | 0.68 | 0.950898 |
Target: 5'- cUCCuUCCUCucccCGUCGACUcgcgucgCGGCGAu -3' miRNA: 3'- -AGGuAGGAGuu--GCAGUUGGa------GUCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 86286 | 0.68 | 0.950898 |
Target: 5'- cCCuucuUCCUCGGCGUCGucaacuGCCcgCAGCu- -3' miRNA: 3'- aGGu---AGGAGUUGCAGU------UGGa-GUCGcu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 54238 | 0.68 | 0.950898 |
Target: 5'- --gAUCCUCAugGgCAACCUgGGCu- -3' miRNA: 3'- aggUAGGAGUugCaGUUGGAgUCGcu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 57576 | 0.68 | 0.954615 |
Target: 5'- gCCGUCCUUGACGUaggcgcacgugacCAggccgGCCUCGGCc- -3' miRNA: 3'- aGGUAGGAGUUGCA-------------GU-----UGGAGUCGcu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 57228 | 0.68 | 0.955016 |
Target: 5'- gCCGUCgCaggCGGCGcgcgCGGCCUCGGCGu -3' miRNA: 3'- aGGUAG-Ga--GUUGCa---GUUGGAGUCGCu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 40396 | 0.67 | 0.958893 |
Target: 5'- cUCC-UCCUCuGCGUCcGCggCGGCGGc -3' miRNA: 3'- -AGGuAGGAGuUGCAGuUGgaGUCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 70661 | 0.67 | 0.958893 |
Target: 5'- cCCGUCCUCAcGCG-CG-CCgcCGGCGAg -3' miRNA: 3'- aGGUAGGAGU-UGCaGUuGGa-GUCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 50808 | 0.67 | 0.958893 |
Target: 5'- cCCcgCCagcgCAGCGUCcacGCCUCGGCc- -3' miRNA: 3'- aGGuaGGa---GUUGCAGu--UGGAGUCGcu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 83985 | 0.67 | 0.96218 |
Target: 5'- -gCGUCCUUGACccuggccuuugaaGUCAACCUCGGgGu -3' miRNA: 3'- agGUAGGAGUUG-------------CAGUUGGAGUCgCu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 109310 | 0.67 | 0.962534 |
Target: 5'- gCCG-CCUCGGCGgcagCAGCggCGGCGGc -3' miRNA: 3'- aGGUaGGAGUUGCa---GUUGgaGUCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 18368 | 0.67 | 0.96913 |
Target: 5'- cUCGUCCUCGGCGUCcAGgCUCAcGUa- -3' miRNA: 3'- aGGUAGGAGUUGCAG-UUgGAGU-CGcu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 139849 | 0.67 | 0.96913 |
Target: 5'- aCCcgCgUCAACGagcUCuuuGCCUCGGCGc -3' miRNA: 3'- aGGuaGgAGUUGC---AGu--UGGAGUCGCu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 138521 | 0.67 | 0.970343 |
Target: 5'- cUCGUCCUCGgggugaugggcgcguACGcCGGCCUgGGCGc -3' miRNA: 3'- aGGUAGGAGU---------------UGCaGUUGGAgUCGCu -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 26875 | 0.67 | 0.971811 |
Target: 5'- gUCGUCCUCGucgACGUCGcacuCCUCcccaaagAGCGGg -3' miRNA: 3'- aGGUAGGAGU---UGCAGUu---GGAG-------UCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 19765 | 0.67 | 0.972098 |
Target: 5'- gCCGUCgaggUCAuCGUCGccgGCCUCGGUGGa -3' miRNA: 3'- aGGUAGg---AGUuGCAGU---UGGAGUCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 59431 | 0.67 | 0.972098 |
Target: 5'- gCCAg-CUCGGCGUCGGCCgccgccgCcGCGAc -3' miRNA: 3'- aGGUagGAGUUGCAGUUGGa------GuCGCU- -5' |
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29607 | 3' | -52.1 | NC_006151.1 | + | 123657 | 0.67 | 0.972098 |
Target: 5'- gUCCGUCUUCcacugcgggGACGUCGAgguCCUCcgcGCGGa -3' miRNA: 3'- -AGGUAGGAG---------UUGCAGUU---GGAGu--CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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