miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 3' -52.1 NC_006151.1 + 139849 0.67 0.96913
Target:  5'- aCCcgCgUCAACGagcUCuuuGCCUCGGCGc -3'
miRNA:   3'- aGGuaGgAGUUGC---AGu--UGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 138521 0.67 0.970343
Target:  5'- cUCGUCCUCGgggugaugggcgcguACGcCGGCCUgGGCGc -3'
miRNA:   3'- aGGUAGGAGU---------------UGCaGUUGGAgUCGCu -5'
29607 3' -52.1 NC_006151.1 + 137239 0.78 0.493142
Target:  5'- aUCGUCCUCGACGUCGacuuucGCCUCGcGCGc -3'
miRNA:   3'- aGGUAGGAGUUGCAGU------UGGAGU-CGCu -5'
29607 3' -52.1 NC_006151.1 + 135522 0.67 0.972098
Target:  5'- aUCaCGUCCUCGGCGgCGAgCggGGCGGg -3'
miRNA:   3'- -AG-GUAGGAGUUGCaGUUgGagUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 131794 0.74 0.700336
Target:  5'- gCCGUCgUCAGCGcgccauccuccUCGGCCUCGGCu- -3'
miRNA:   3'- aGGUAGgAGUUGC-----------AGUUGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 128783 0.71 0.834645
Target:  5'- cUCCAcggCCUCG--GUC-GCCUCGGCGAg -3'
miRNA:   3'- -AGGUa--GGAGUugCAGuUGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 125489 0.73 0.741122
Target:  5'- gCCAgcgcgUCUCGGCGcgCAugCUCGGCGAc -3'
miRNA:   3'- aGGUa----GGAGUUGCa-GUugGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 123657 0.67 0.972098
Target:  5'- gUCCGUCUUCcacugcgggGACGUCGAgguCCUCcgcGCGGa -3'
miRNA:   3'- -AGGUAGGAG---------UUGCAGUU---GGAGu--CGCU- -5'
29607 3' -52.1 NC_006151.1 + 117318 0.75 0.658575
Target:  5'- gCCAcgCCgagggCGGCGUCGGCCUCGGCc- -3'
miRNA:   3'- aGGUa-GGa----GUUGCAGUUGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 110968 0.66 0.98392
Target:  5'- -gCGUCCUCcACGaUCGcgugcGCCUCGGCc- -3'
miRNA:   3'- agGUAGGAGuUGC-AGU-----UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 109310 0.67 0.962534
Target:  5'- gCCG-CCUCGGCGgcagCAGCggCGGCGGc -3'
miRNA:   3'- aGGUaGGAGUUGCa---GUUGgaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 101796 0.69 0.926589
Target:  5'- cCCGUCCUCGcCGUCGcccccguccccGCCguccccgucUCGGCGGc -3'
miRNA:   3'- aGGUAGGAGUuGCAGU-----------UGG---------AGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 94298 0.66 0.981931
Target:  5'- gUCCGUCUcgagcCAGCgGUUGGCCacgcUCAGCGAg -3'
miRNA:   3'- -AGGUAGGa----GUUG-CAGUUGG----AGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 94269 0.75 0.648055
Target:  5'- -aCGUCCUUGGCGUCGucGCC-CAGCGGc -3'
miRNA:   3'- agGUAGGAGUUGCAGU--UGGaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 92253 0.74 0.710648
Target:  5'- gUCCAccgCCUCuGCGUCAACCUCAuccGCc- -3'
miRNA:   3'- -AGGUa--GGAGuUGCAGUUGGAGU---CGcu -5'
29607 3' -52.1 NC_006151.1 + 91708 0.66 0.985739
Target:  5'- gUCCAggUCCUCGAggccguCGUCGAa--CAGCGAc -3'
miRNA:   3'- -AGGU--AGGAGUU------GCAGUUggaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 87554 0.69 0.92097
Target:  5'- gUCCAggCCUCggUcUCGGCCcCGGCGGa -3'
miRNA:   3'- -AGGUa-GGAGuuGcAGUUGGaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 86413 0.66 0.98392
Target:  5'- aCCugcCCUCGGCGUCccuguCCUC-GCGGc -3'
miRNA:   3'- aGGua-GGAGUUGCAGuu---GGAGuCGCU- -5'
29607 3' -52.1 NC_006151.1 + 86286 0.68 0.950898
Target:  5'- cCCuucuUCCUCGGCGUCGucaacuGCCcgCAGCu- -3'
miRNA:   3'- aGGu---AGGAGUUGCAGU------UGGa-GUCGcu -5'
29607 3' -52.1 NC_006151.1 + 83985 0.67 0.96218
Target:  5'- -gCGUCCUUGACccuggccuuugaaGUCAACCUCGGgGu -3'
miRNA:   3'- agGUAGGAGUUG-------------CAGUUGGAGUCgCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.