Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29607 | 5' | -58.5 | NC_006151.1 | + | 47225 | 0.71 | 0.467265 |
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Target: 5'- gGGUCgGCUGGGCGGCucggCUGGuuGGCUGGcugGCg -3' miRNA: 3'- -UCAG-CGACCUGCUG----GACC--UCGACC---UG- -5' |
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| 29607 | 5' | -58.5 | NC_006151.1 | + | 83628 | 0.72 | 0.422215 |
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Target: 5'- cGUCGCgaaGGCGGCCUGGuGCUGcGCc -3' miRNA: 3'- uCAGCGac-CUGCUGGACCuCGACcUG- -5' |
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| 29607 | 5' | -58.5 | NC_006151.1 | + | 122646 | 0.72 | 0.413521 |
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Target: 5'- --aC-CUGGACGACCUGGAGC-GGcGCg -3' miRNA: 3'- ucaGcGACCUGCUGGACCUCGaCC-UG- -5' |
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| 29607 | 5' | -58.5 | NC_006151.1 | + | 106316 | 0.74 | 0.325569 |
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Target: 5'- aAGaCGCUGGACgcgGugCUGGAccgcgcGCUGGACg -3' miRNA: 3'- -UCaGCGACCUG---CugGACCU------CGACCUG- -5' |
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| 29607 | 5' | -58.5 | NC_006151.1 | + | 77609 | 0.75 | 0.311149 |
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Target: 5'- ---aGCUGGaccucuGCGGCCgcgcGGAGCUGGACg -3' miRNA: 3'- ucagCGACC------UGCUGGa---CCUCGACCUG- -5' |
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| 29607 | 5' | -58.5 | NC_006151.1 | + | 120903 | 0.77 | 0.240525 |
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Target: 5'- --cCGCUGGugGugCUGGGcCUGGGCg -3' miRNA: 3'- ucaGCGACCugCugGACCUcGACCUG- -5' |
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| 29607 | 5' | -58.5 | NC_006151.1 | + | 3800 | 0.8 | 0.139209 |
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Target: 5'- ---aGCUGGACuugGugCUGGAGCUGGACu -3' miRNA: 3'- ucagCGACCUG---CugGACCUCGACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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