miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 5' -58.5 NC_006151.1 + 84384 0.66 0.791081
Target:  5'- cGG-CGCgcggGGACGGgCggGGAGCgggUGGGCg -3'
miRNA:   3'- -UCaGCGa---CCUGCUgGa-CCUCG---ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 85192 0.66 0.80358
Target:  5'- --cCGCUGGGCaucgcgGACCugcUGGAGCggguccccgaguaccUGGACg -3'
miRNA:   3'- ucaGCGACCUG------CUGG---ACCUCG---------------ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 86700 0.71 0.495454
Target:  5'- --cUGCUGcGCGACCgcugGGAGCUGGuCg -3'
miRNA:   3'- ucaGCGACcUGCUGGa---CCUCGACCuG- -5'
29607 5' -58.5 NC_006151.1 + 92450 0.66 0.772751
Target:  5'- --gCGCUGccgcGACGuccucgcgaGCCUGGGGgUGGACu -3'
miRNA:   3'- ucaGCGAC----CUGC---------UGGACCUCgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 92571 0.71 0.485969
Target:  5'- gAGUCGCUGGAgGGCCgcgaGGuGGCccccgaGGACg -3'
miRNA:   3'- -UCAGCGACCUgCUGGa---CC-UCGa-----CCUG- -5'
29607 5' -58.5 NC_006151.1 + 98442 0.66 0.763397
Target:  5'- -cUCGCcgagaaccUGGcCGGCCUGGcGCUGuGGCg -3'
miRNA:   3'- ucAGCG--------ACCuGCUGGACCuCGAC-CUG- -5'
29607 5' -58.5 NC_006151.1 + 99439 0.67 0.753928
Target:  5'- cGUCGC-GGAC-ACgCUGGAGCcccucuacggGGACg -3'
miRNA:   3'- uCAGCGaCCUGcUG-GACCUCGa---------CCUG- -5'
29607 5' -58.5 NC_006151.1 + 102916 0.7 0.544033
Target:  5'- -cUCGCUGG-CGGCCgccgaGGAGCggcugcgcgcgcUGGACg -3'
miRNA:   3'- ucAGCGACCuGCUGGa----CCUCG------------ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103067 0.66 0.763397
Target:  5'- cAGgCGCacGGGC-ACCUGGAGCggcgcgagcUGGACa -3'
miRNA:   3'- -UCaGCGa-CCUGcUGGACCUCG---------ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103400 0.66 0.791081
Target:  5'- --cUGCUGGGCGACUUuGccacGCUGGGCc -3'
miRNA:   3'- ucaGCGACCUGCUGGAcCu---CGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103702 0.68 0.69521
Target:  5'- cGcCGCcgUGGAgcACCcGGAGCUGGGCu -3'
miRNA:   3'- uCaGCG--ACCUgcUGGaCCUCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103876 0.69 0.634611
Target:  5'- gGGaCGCUGGuCGAggcgcgccaCCUGGcGCUGGAg -3'
miRNA:   3'- -UCaGCGACCuGCU---------GGACCuCGACCUg -5'
29607 5' -58.5 NC_006151.1 + 105253 0.7 0.553945
Target:  5'- aGGUCGCcugGGACGagGCCUGGgAGgacuUUGGGCg -3'
miRNA:   3'- -UCAGCGa--CCUGC--UGGACC-UC----GACCUG- -5'
29607 5' -58.5 NC_006151.1 + 106316 0.74 0.325569
Target:  5'- aAGaCGCUGGACgcgGugCUGGAccgcgcGCUGGACg -3'
miRNA:   3'- -UCaGCGACCUG---CugGACCU------CGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 110018 0.68 0.665029
Target:  5'- ---aGCUGGACc-CCUGGGGcCUGGAg -3'
miRNA:   3'- ucagCGACCUGcuGGACCUC-GACCUg -5'
29607 5' -58.5 NC_006151.1 + 110863 0.69 0.61431
Target:  5'- uAGUCGCUGGugGCGAacaUGG-GCUGGcGCu -3'
miRNA:   3'- -UCAGCGACC--UGCUgg-ACCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 113323 0.67 0.734682
Target:  5'- --aCGCUGGGgccCGugCUGGcGCUGGcGCu -3'
miRNA:   3'- ucaGCGACCU---GCugGACCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 116977 0.69 0.594061
Target:  5'- cGUCGCUGGACG-UgaGGcGCUGGuGCc -3'
miRNA:   3'- uCAGCGACCUGCuGgaCCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 120903 0.77 0.240525
Target:  5'- --cCGCUGGugGugCUGGGcCUGGGCg -3'
miRNA:   3'- ucaGCGACCugCugGACCUcGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 121311 0.66 0.763397
Target:  5'- gGG-CGCUGGagcguggagGCGGCCgccGAGCUGGuGCg -3'
miRNA:   3'- -UCaGCGACC---------UGCUGGac-CUCGACC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.