miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 5' -58.5 NC_006151.1 + 3800 0.8 0.139209
Target:  5'- ---aGCUGGACuugGugCUGGAGCUGGACu -3'
miRNA:   3'- ucagCGACCUG---CugGACCUCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 3836 0.67 0.705178
Target:  5'- cGggGCUGGAgGGCCcGGAGCcGGGg -3'
miRNA:   3'- uCagCGACCUgCUGGaCCUCGaCCUg -5'
29607 5' -58.5 NC_006151.1 + 5469 0.67 0.724923
Target:  5'- cGGUgG-UGGugGAgUUGGAGUUGGAg -3'
miRNA:   3'- -UCAgCgACCugCUgGACCUCGACCUg -5'
29607 5' -58.5 NC_006151.1 + 6290 0.68 0.69521
Target:  5'- cGGcCGCgGcGGCGGCCgccaGGAGCUGG-Cu -3'
miRNA:   3'- -UCaGCGaC-CUGCUGGa---CCUCGACCuG- -5'
29607 5' -58.5 NC_006151.1 + 14264 0.7 0.524389
Target:  5'- cGGUCGg-GGugGGCCgGGAG-UGGGCg -3'
miRNA:   3'- -UCAGCgaCCugCUGGaCCUCgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 21381 0.68 0.654905
Target:  5'- --cCGCUGGgcacgACGGCCggcGGGGCgaagGGGCg -3'
miRNA:   3'- ucaGCGACC-----UGCUGGa--CCUCGa---CCUG- -5'
29607 5' -58.5 NC_006151.1 + 21476 0.67 0.715085
Target:  5'- cGUCGCcGGcucgggcagGCGGCCggGGGGCgcGGGCg -3'
miRNA:   3'- uCAGCGaCC---------UGCUGGa-CCUCGa-CCUG- -5'
29607 5' -58.5 NC_006151.1 + 28088 0.68 0.69521
Target:  5'- cGUCGUccGGGCGuCCUcGAGCgGGGCg -3'
miRNA:   3'- uCAGCGa-CCUGCuGGAcCUCGaCCUG- -5'
29607 5' -58.5 NC_006151.1 + 29432 0.67 0.715085
Target:  5'- uGGcCGCgggGGGCGGCggGGAGaggGGACg -3'
miRNA:   3'- -UCaGCGa--CCUGCUGgaCCUCga-CCUG- -5'
29607 5' -58.5 NC_006151.1 + 30832 0.66 0.772751
Target:  5'- gAGUUGCgUGGGCGGagaGGAGCgaggaGGACu -3'
miRNA:   3'- -UCAGCG-ACCUGCUggaCCUCGa----CCUG- -5'
29607 5' -58.5 NC_006151.1 + 47225 0.71 0.467265
Target:  5'- gGGUCgGCUGGGCGGCucggCUGGuuGGCUGGcugGCg -3'
miRNA:   3'- -UCAG-CGACCUGCUG----GACC--UCGACC---UG- -5'
29607 5' -58.5 NC_006151.1 + 49851 0.66 0.781982
Target:  5'- cGGgcccgCGCUGGGCGcagcACgUGGAGUUuGACa -3'
miRNA:   3'- -UCa----GCGACCUGC----UGgACCUCGAcCUG- -5'
29607 5' -58.5 NC_006151.1 + 54694 0.69 0.634611
Target:  5'- cGUCGCcGGcaGCGugCUGGgccagGGCcUGGACg -3'
miRNA:   3'- uCAGCGaCC--UGCugGACC-----UCG-ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 61761 0.66 0.772751
Target:  5'- cGGUCGC-GGG-GGCCgUGGuGCUGcGGCg -3'
miRNA:   3'- -UCAGCGaCCUgCUGG-ACCuCGAC-CUG- -5'
29607 5' -58.5 NC_006151.1 + 77572 0.67 0.715085
Target:  5'- -uUCG-UGGACGcCCUGGGGCUGcugcugccgcuGACg -3'
miRNA:   3'- ucAGCgACCUGCuGGACCUCGAC-----------CUG- -5'
29607 5' -58.5 NC_006151.1 + 77609 0.75 0.311149
Target:  5'- ---aGCUGGaccucuGCGGCCgcgcGGAGCUGGACg -3'
miRNA:   3'- ucagCGACC------UGCUGGa---CCUCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 78325 0.67 0.744354
Target:  5'- ---gGCUGGACGAgcgcCCcGGGGC-GGGCg -3'
miRNA:   3'- ucagCGACCUGCU----GGaCCUCGaCCUG- -5'
29607 5' -58.5 NC_006151.1 + 78574 0.71 0.467265
Target:  5'- aGGaCGCgGcGACgGGCCUGGAGCUGG-Cg -3'
miRNA:   3'- -UCaGCGaC-CUG-CUGGACCUCGACCuG- -5'
29607 5' -58.5 NC_006151.1 + 78652 0.68 0.68519
Target:  5'- ---aGCUGGuggagGCGGCCggggcgcgGGuGCUGGACg -3'
miRNA:   3'- ucagCGACC-----UGCUGGa-------CCuCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 83628 0.72 0.422215
Target:  5'- cGUCGCgaaGGCGGCCUGGuGCUGcGCc -3'
miRNA:   3'- uCAGCGac-CUGCUGGACCuCGACcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.