miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 5' -58.5 NC_006151.1 + 3800 0.8 0.139209
Target:  5'- ---aGCUGGACuugGugCUGGAGCUGGACu -3'
miRNA:   3'- ucagCGACCUG---CugGACCUCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 120903 0.77 0.240525
Target:  5'- --cCGCUGGugGugCUGGGcCUGGGCg -3'
miRNA:   3'- ucaGCGACCugCugGACCUcGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 77609 0.75 0.311149
Target:  5'- ---aGCUGGaccucuGCGGCCgcgcGGAGCUGGACg -3'
miRNA:   3'- ucagCGACC------UGCUGGa---CCUCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 106316 0.74 0.325569
Target:  5'- aAGaCGCUGGACgcgGugCUGGAccgcgcGCUGGACg -3'
miRNA:   3'- -UCaGCGACCUG---CugGACCU------CGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 122646 0.72 0.413521
Target:  5'- --aC-CUGGACGACCUGGAGC-GGcGCg -3'
miRNA:   3'- ucaGcGACCUGCUGGACCUCGaCC-UG- -5'
29607 5' -58.5 NC_006151.1 + 83628 0.72 0.422215
Target:  5'- cGUCGCgaaGGCGGCCUGGuGCUGcGCc -3'
miRNA:   3'- uCAGCGac-CUGCUGGACCuCGACcUG- -5'
29607 5' -58.5 NC_006151.1 + 47225 0.71 0.467265
Target:  5'- gGGUCgGCUGGGCGGCucggCUGGuuGGCUGGcugGCg -3'
miRNA:   3'- -UCAG-CGACCUGCUG----GACC--UCGACC---UG- -5'
29607 5' -58.5 NC_006151.1 + 78574 0.71 0.467265
Target:  5'- aGGaCGCgGcGACgGGCCUGGAGCUGG-Cg -3'
miRNA:   3'- -UCaGCGaC-CUG-CUGGACCUCGACCuG- -5'
29607 5' -58.5 NC_006151.1 + 92571 0.71 0.485969
Target:  5'- gAGUCGCUGGAgGGCCgcgaGGuGGCccccgaGGACg -3'
miRNA:   3'- -UCAGCGACCUgCUGGa---CC-UCGa-----CCUG- -5'
29607 5' -58.5 NC_006151.1 + 86700 0.71 0.495454
Target:  5'- --cUGCUGcGCGACCgcugGGAGCUGGuCg -3'
miRNA:   3'- ucaGCGACcUGCUGGa---CCUCGACCuG- -5'
29607 5' -58.5 NC_006151.1 + 14264 0.7 0.524389
Target:  5'- cGGUCGg-GGugGGCCgGGAG-UGGGCg -3'
miRNA:   3'- -UCAGCgaCCugCUGGaCCUCgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 135759 0.7 0.524389
Target:  5'- cGUaCGCgugGGACGGCgCcGG-GCUGGACg -3'
miRNA:   3'- uCA-GCGa--CCUGCUG-GaCCuCGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 102916 0.7 0.544033
Target:  5'- -cUCGCUGG-CGGCCgccgaGGAGCggcugcgcgcgcUGGACg -3'
miRNA:   3'- ucAGCGACCuGCUGGa----CCUCG------------ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 105253 0.7 0.553945
Target:  5'- aGGUCGCcugGGACGagGCCUGGgAGgacuUUGGGCg -3'
miRNA:   3'- -UCAGCGa--CCUGC--UGGACC-UC----GACCUG- -5'
29607 5' -58.5 NC_006151.1 + 116977 0.69 0.594061
Target:  5'- cGUCGCUGGACG-UgaGGcGCUGGuGCc -3'
miRNA:   3'- uCAGCGACCUGCuGgaCCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 110863 0.69 0.61431
Target:  5'- uAGUCGCUGGugGCGAacaUGG-GCUGGcGCu -3'
miRNA:   3'- -UCAGCGACC--UGCUgg-ACCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 54694 0.69 0.634611
Target:  5'- cGUCGCcGGcaGCGugCUGGgccagGGCcUGGACg -3'
miRNA:   3'- uCAGCGaCC--UGCugGACC-----UCG-ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103876 0.69 0.634611
Target:  5'- gGGaCGCUGGuCGAggcgcgccaCCUGGcGCUGGAg -3'
miRNA:   3'- -UCaGCGACCuGCU---------GGACCuCGACCUg -5'
29607 5' -58.5 NC_006151.1 + 21381 0.68 0.654905
Target:  5'- --cCGCUGGgcacgACGGCCggcGGGGCgaagGGGCg -3'
miRNA:   3'- ucaGCGACC-----UGCUGGa--CCUCGa---CCUG- -5'
29607 5' -58.5 NC_006151.1 + 121427 0.68 0.663006
Target:  5'- cGUCGCgGGGCucgcgccGGCCUcgcuggugcccgcGGAGCUGGGg -3'
miRNA:   3'- uCAGCGaCCUG-------CUGGA-------------CCUCGACCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.