miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 3' -50.8 NC_006151.1 + 103975 0.81 0.383009
Target:  5'- cGCGUCGGCGAGCuggaggcGGCCGUGg -3'
miRNA:   3'- -CGUAGUCGCUCGuauauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 127532 0.77 0.572346
Target:  5'- cGCGUCAGCGgggcccagggGGCGUcgucGUcgUGGCCGCc -3'
miRNA:   3'- -CGUAGUCGC----------UCGUA----UAuaACCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 71941 0.77 0.582943
Target:  5'- aGCAcCAGCGAGCGcg---UGGCCGCc -3'
miRNA:   3'- -CGUaGUCGCUCGUauauaACCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 21561 0.75 0.704394
Target:  5'- gGCcUCGGCGAGCccgccgagGGCCGCGc -3'
miRNA:   3'- -CGuAGUCGCUCGuauauaa-CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 117246 0.75 0.728318
Target:  5'- aCGUCGGCGGGCccgaggcgcgGGCCGCGc -3'
miRNA:   3'- cGUAGUCGCUCGuauauaa---CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 135350 0.75 0.731406
Target:  5'- cGUGUCcGCGAGCcgccgcgcGUUGGCCGCGu -3'
miRNA:   3'- -CGUAGuCGCUCGuaua----UAACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 64218 0.74 0.771655
Target:  5'- gGCGUgGGCGccucGGCGUAcag-GGCCGCGa -3'
miRNA:   3'- -CGUAgUCGC----UCGUAUauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 3978 0.73 0.809726
Target:  5'- gGCcUCGGCGAGCc------GGCCGCGg -3'
miRNA:   3'- -CGuAGUCGCUCGuauauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 2450 0.73 0.809726
Target:  5'- gGCcgCAGCGGGgcgccgagccccCAgcgGUUGGCCGCGc -3'
miRNA:   3'- -CGuaGUCGCUC------------GUauaUAACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 133407 0.73 0.827743
Target:  5'- ----gAGCGGGCGguc-UUGGCCGCGg -3'
miRNA:   3'- cguagUCGCUCGUauauAACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 52793 0.72 0.844981
Target:  5'- cGCGgcUCuGCGAGUAguugGUgaugcggccggcGUUGGCCGCGa -3'
miRNA:   3'- -CGU--AGuCGCUCGUa---UA------------UAACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 131956 0.72 0.853287
Target:  5'- gGCGagGGCGGGCGgcaGUAcgugUGGUCGCGg -3'
miRNA:   3'- -CGUagUCGCUCGUa--UAUa---ACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 131101 0.72 0.853287
Target:  5'- aCGUCGGCGGGgGgccc--GGCCGCGg -3'
miRNA:   3'- cGUAGUCGCUCgUauauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 25255 0.72 0.869233
Target:  5'- aCAUCGccaacauggugcGCGAGUugGUGUGUgugcuUGGCCGCGg -3'
miRNA:   3'- cGUAGU------------CGCUCG--UAUAUA-----ACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 65967 0.71 0.891391
Target:  5'- cGCGUCGuCGAGCcgGUccucgccGGCCGCGa -3'
miRNA:   3'- -CGUAGUcGCUCGuaUAuaa----CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 36553 0.71 0.898284
Target:  5'- aGCA-CAGCcAGCAgcgg-UGGCCGCa -3'
miRNA:   3'- -CGUaGUCGcUCGUauauaACCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 2378 0.7 0.913791
Target:  5'- cGCAacUCGGCcGGCAggcccucggGGCCGCGg -3'
miRNA:   3'- -CGU--AGUCGcUCGUauauaa---CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 53653 0.7 0.91623
Target:  5'- cCGUCGGCGGGCucgugg-GGCaCGCGu -3'
miRNA:   3'- cGUAGUCGCUCGuauauaaCCG-GCGC- -5'
29608 3' -50.8 NC_006151.1 + 84303 0.7 0.923299
Target:  5'- cGCggCAacGCGAGCGcga--UGGCCGCGa -3'
miRNA:   3'- -CGuaGU--CGCUCGUauauaACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 100843 0.7 0.923299
Target:  5'- cGCucUCGGCGAGCGUcaacGUGcgcgacugGGCCGCc -3'
miRNA:   3'- -CGu-AGUCGCUCGUA----UAUaa------CCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.