miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 3' -50.8 NC_006151.1 + 2026 0.67 0.983282
Target:  5'- cGC-UCAGCgGAGCAgcagGUAggGGuuGCc -3'
miRNA:   3'- -CGuAGUCG-CUCGUa---UAUaaCCggCGc -5'
29608 3' -50.8 NC_006151.1 + 2378 0.7 0.913791
Target:  5'- cGCAacUCGGCcGGCAggcccucggGGCCGCGg -3'
miRNA:   3'- -CGU--AGUCGcUCGUauauaa---CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 2450 0.73 0.809726
Target:  5'- gGCcgCAGCGGGgcgccgagccccCAgcgGUUGGCCGCGc -3'
miRNA:   3'- -CGuaGUCGCUC------------GUauaUAACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 3084 0.69 0.948706
Target:  5'- gGCGaaggCGGCGAGCAgcgccgAgaGGCCGCc -3'
miRNA:   3'- -CGUa---GUCGCUCGUaua---UaaCCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 3377 0.66 0.988035
Target:  5'- gGCAguaggCGGCGAGgGccgccucggagGGCCGCGg -3'
miRNA:   3'- -CGUa----GUCGCUCgUauauaa-----CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 3978 0.73 0.809726
Target:  5'- gGCcUCGGCGAGCc------GGCCGCGg -3'
miRNA:   3'- -CGuAGUCGCUCGuauauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 4160 0.67 0.981199
Target:  5'- cGCGUCGcggagcGCGAGCAgcgc--GGCCGUc -3'
miRNA:   3'- -CGUAGU------CGCUCGUauauaaCCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 4793 0.69 0.953014
Target:  5'- gGCcgCGGCGcGGUAgcg---GGCCGCGg -3'
miRNA:   3'- -CGuaGUCGC-UCGUauauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 17056 0.67 0.976461
Target:  5'- gGCGUCGGCGucCGUcagcccgGGCCGCc -3'
miRNA:   3'- -CGUAGUCGCucGUAuauaa--CCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 18161 0.68 0.970901
Target:  5'- gGCggCGGCGGGCAUGUcggaAUgcgggcgGGCCGg- -3'
miRNA:   3'- -CGuaGUCGCUCGUAUA----UAa------CCGGCgc -5'
29608 3' -50.8 NC_006151.1 + 19357 0.67 0.983282
Target:  5'- gGCGUCGuGC-AGCGUGUAgaGGcCCGUGu -3'
miRNA:   3'- -CGUAGU-CGcUCGUAUAUaaCC-GGCGC- -5'
29608 3' -50.8 NC_006151.1 + 19913 0.66 0.990698
Target:  5'- uGCG-CGGCGcGCAgcagaaagGGCCGCa -3'
miRNA:   3'- -CGUaGUCGCuCGUauauaa--CCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 20147 0.69 0.944143
Target:  5'- cGCGggGGCGGcGCGUGgaccgccgGGCCGCGc -3'
miRNA:   3'- -CGUagUCGCU-CGUAUauaa----CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 21561 0.75 0.704394
Target:  5'- gGCcUCGGCGAGCccgccgagGGCCGCGc -3'
miRNA:   3'- -CGuAGUCGCUCGuauauaa-CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 23906 0.67 0.975943
Target:  5'- gGCGUCGgucGCGGGCccgacg-GGCCGCc -3'
miRNA:   3'- -CGUAGU---CGCUCGuauauaaCCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 25255 0.72 0.869233
Target:  5'- aCAUCGccaacauggugcGCGAGUugGUGUGUgugcuUGGCCGCGg -3'
miRNA:   3'- cGUAGU------------CGCUCG--UAUAUA-----ACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 30690 0.66 0.991194
Target:  5'- ---cCGGCGGGCGgggggGUGUcggGGCCGgGu -3'
miRNA:   3'- cguaGUCGCUCGUa----UAUAa--CCGGCgC- -5'
29608 3' -50.8 NC_006151.1 + 33918 0.69 0.948706
Target:  5'- cGCGUcCGGCGGGCGgaucgaGGcCCGCGc -3'
miRNA:   3'- -CGUA-GUCGCUCGUauauaaCC-GGCGC- -5'
29608 3' -50.8 NC_006151.1 + 35232 0.66 0.986918
Target:  5'- ----gGGCGAGCcgAga-UGGCCGCc -3'
miRNA:   3'- cguagUCGCUCGuaUauaACCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 36553 0.71 0.898284
Target:  5'- aGCA-CAGCcAGCAgcgg-UGGCCGCa -3'
miRNA:   3'- -CGUaGUCGcUCGUauauaACCGGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.