miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 114416 0.67 0.939563
Target:  5'- cGGUGCacGUGCACcacCGcGUGCUGgACCg -3'
miRNA:   3'- -CCGCGc-CACGUGua-GCaCAUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 110887 0.67 0.939085
Target:  5'- uGGCGCuccacgaGGUGCuuGUCGUGcGCguGCCg -3'
miRNA:   3'- -CCGCG-------CCACGugUAGCACaUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 133672 0.67 0.938124
Target:  5'- cGGCGCGGcgGCGCGcccccgaggcggucUCGUcgGCggcGACCc -3'
miRNA:   3'- -CCGCGCCa-CGUGU--------------AGCAcaUGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 25267 0.67 0.934681
Target:  5'- uGGUGCGcGaGUugGUgUGUGUGCUuGGCCg -3'
miRNA:   3'- -CCGCGC-CaCGugUA-GCACAUGA-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 44920 0.67 0.934681
Target:  5'- aGGgGCGuGUGCGCGUaaaGUGCgaGGCCc -3'
miRNA:   3'- -CCgCGC-CACGUGUAgcaCAUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 101289 0.67 0.934681
Target:  5'- gGGCGCGGgcgGCGCcgCGcUGcACUG-Cg -3'
miRNA:   3'- -CCGCGCCa--CGUGuaGC-ACaUGACuGg -5'
29608 5' -53.7 NC_006151.1 + 137770 0.67 0.929556
Target:  5'- uGGCGCGcGUGCuccaGCAggcCGUGcUGCUGGa- -3'
miRNA:   3'- -CCGCGC-CACG----UGUa--GCAC-AUGACUgg -5'
29608 5' -53.7 NC_006151.1 + 76578 0.67 0.929556
Target:  5'- cGGUGCGaGUGCACcUCGaUGUug-GACa -3'
miRNA:   3'- -CCGCGC-CACGUGuAGC-ACAugaCUGg -5'
29608 5' -53.7 NC_006151.1 + 1004 0.67 0.92903
Target:  5'- gGGCGaUGGUugcaacgGCAguUCccUGUACUGACCa -3'
miRNA:   3'- -CCGC-GCCA-------CGUguAGc-ACAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 111617 0.68 0.926364
Target:  5'- cGGUGCuGUGCgucgaggccaggaucACGUUGuUGUGCUcGGCCg -3'
miRNA:   3'- -CCGCGcCACG---------------UGUAGC-ACAUGA-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 138717 0.68 0.924187
Target:  5'- uGCGCGccGCGCgcggGUCGUGUACgcgcGCCg -3'
miRNA:   3'- cCGCGCcaCGUG----UAGCACAUGac--UGG- -5'
29608 5' -53.7 NC_006151.1 + 64769 0.68 0.918576
Target:  5'- uGCGCGGggGCugGUUGccgGggcgcgaGCUGGCCa -3'
miRNA:   3'- cCGCGCCa-CGugUAGCa--Ca------UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 75392 0.68 0.918576
Target:  5'- cGGCGCGGgGCGgGUgCGUGcGCgGGuCCg -3'
miRNA:   3'- -CCGCGCCaCGUgUA-GCACaUGaCU-GG- -5'
29608 5' -53.7 NC_006151.1 + 142014 0.68 0.918576
Target:  5'- uGGgGCGGgugugGCACcaCGUGggugcauCUGACCc -3'
miRNA:   3'- -CCgCGCCa----CGUGuaGCACau-----GACUGG- -5'
29608 5' -53.7 NC_006151.1 + 27086 0.68 0.916845
Target:  5'- gGGCGCGGcgcaggGCGCG-CGUGUcgcccgucacgucgGC-GGCCg -3'
miRNA:   3'- -CCGCGCCa-----CGUGUaGCACA--------------UGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 137086 0.68 0.912721
Target:  5'- cGGCGCcagGC-CuUCGcgGUGCUGGCCg -3'
miRNA:   3'- -CCGCGccaCGuGuAGCa-CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 82619 0.68 0.912721
Target:  5'- cGCGCGG-GCGCcgCGgUGgGCgcggGACCc -3'
miRNA:   3'- cCGCGCCaCGUGuaGC-ACaUGa---CUGG- -5'
29608 5' -53.7 NC_006151.1 + 18163 0.68 0.912721
Target:  5'- cGGCgGCGG-GCAUGUCGgaaUGCgggcgGGCCg -3'
miRNA:   3'- -CCG-CGCCaCGUGUAGCac-AUGa----CUGG- -5'
29608 5' -53.7 NC_006151.1 + 14979 0.68 0.912721
Target:  5'- aGCGCGGgcGCuACGUCGUcgagcaccccgaGUACgGGCCc -3'
miRNA:   3'- cCGCGCCa-CG-UGUAGCA------------CAUGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 73928 0.68 0.912721
Target:  5'- aGGcCGUGGUGCAgcgagcCGUCGUgcGUGCgcaugucccgcgUGGCCa -3'
miRNA:   3'- -CC-GCGCCACGU------GUAGCA--CAUG------------ACUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.