miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 106410 0.66 0.960044
Target:  5'- aGGCGCuGUucacgcuGCGCGUCGccgACUGgACCg -3'
miRNA:   3'- -CCGCGcCA-------CGUGUAGCacaUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 121412 0.66 0.956702
Target:  5'- cGGCGCGGgcggGgACGUCGcGggGCUcgcgccGGCCu -3'
miRNA:   3'- -CCGCGCCa---CgUGUAGCaCa-UGA------CUGG- -5'
29608 5' -53.7 NC_006151.1 + 45406 0.66 0.956702
Target:  5'- uGGUgGUGGUGC-CggUGUGUugUGgGCCg -3'
miRNA:   3'- -CCG-CGCCACGuGuaGCACAugAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 39453 0.66 0.956702
Target:  5'- cGGcCGCccaGUGCGC--CGUGcGCUGGCCc -3'
miRNA:   3'- -CC-GCGc--CACGUGuaGCACaUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 31433 0.66 0.956702
Target:  5'- gGGaCGgGGUGCGCGcgCGUGUGuguaUGugUa -3'
miRNA:   3'- -CC-GCgCCACGUGUa-GCACAUg---ACugG- -5'
29608 5' -53.7 NC_006151.1 + 59548 0.67 0.95277
Target:  5'- cGCGCGG-GCACGUUGaaGU-CgggGGCCa -3'
miRNA:   3'- cCGCGCCaCGUGUAGCa-CAuGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 76627 0.67 0.95277
Target:  5'- uGGC-CGG-GCGCuccAUCGUGUgGCgacGACCg -3'
miRNA:   3'- -CCGcGCCaCGUG---UAGCACA-UGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 114151 0.67 0.95277
Target:  5'- cGGCuCGG-GCGCAgcgaccgcgCGgcccucGUGCUGGCCu -3'
miRNA:   3'- -CCGcGCCaCGUGUa--------GCa-----CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 123154 0.67 0.952364
Target:  5'- cGGCGCGaGcuggagaagacccUGCGCGUgaaCGUGUACggcGACg -3'
miRNA:   3'- -CCGCGC-C-------------ACGUGUA---GCACAUGa--CUGg -5'
29608 5' -53.7 NC_006151.1 + 130958 0.67 0.948605
Target:  5'- cGCGCGG-GCGCGggGgccgGUACcccGGCCg -3'
miRNA:   3'- cCGCGCCaCGUGUagCa---CAUGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 72964 0.67 0.948605
Target:  5'- aGGC-CGGgccGCuCAUguUGUACUGGCCg -3'
miRNA:   3'- -CCGcGCCa--CGuGUAgcACAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 123271 0.67 0.947744
Target:  5'- cGCGCGG-GCAcCGUCGUGgacgagcgcgagACgGGCUg -3'
miRNA:   3'- cCGCGCCaCGU-GUAGCACa-----------UGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 86508 0.67 0.944204
Target:  5'- cGGCGCGuGgGCAcCAUCGUgguGUACgacGCCu -3'
miRNA:   3'- -CCGCGC-CaCGU-GUAGCA---CAUGac-UGG- -5'
29608 5' -53.7 NC_006151.1 + 106799 0.67 0.944204
Target:  5'- cGGCgGCGGUGCuCGUCGg-----GGCCc -3'
miRNA:   3'- -CCG-CGCCACGuGUAGCacaugaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 71100 0.67 0.944204
Target:  5'- gGGCGCGG-GCGC--CGUGcGCU-ACCc -3'
miRNA:   3'- -CCGCGCCaCGUGuaGCACaUGAcUGG- -5'
29608 5' -53.7 NC_006151.1 + 135448 0.67 0.942837
Target:  5'- uGCGCuggcaggccugguaGGUGCGCGccagCGUGUccGCgcgGGCCa -3'
miRNA:   3'- cCGCG--------------CCACGUGUa---GCACA--UGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 101479 0.67 0.939563
Target:  5'- cGcCGCGGcG-ACGUCGUGUACgucuucGACCc -3'
miRNA:   3'- cC-GCGCCaCgUGUAGCACAUGa-----CUGG- -5'
29608 5' -53.7 NC_006151.1 + 73996 0.67 0.939563
Target:  5'- cGGCGCcaccgaggccaGGagGgGCGUCGUGcGCUcGGCCa -3'
miRNA:   3'- -CCGCG-----------CCa-CgUGUAGCACaUGA-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 67747 0.67 0.939563
Target:  5'- cGGCGCGGcgGCccCGUCGggGUGC-GGCg -3'
miRNA:   3'- -CCGCGCCa-CGu-GUAGCa-CAUGaCUGg -5'
29608 5' -53.7 NC_006151.1 + 46501 0.67 0.939563
Target:  5'- aGCGgGGUGCACA-CGgaggauCUGACg -3'
miRNA:   3'- cCGCgCCACGUGUaGCacau--GACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.