miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 48591 0.66 0.970186
Target:  5'- -cCGgGGUGCGCcUCGUcGUGCcuGCCg -3'
miRNA:   3'- ccGCgCCACGUGuAGCA-CAUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 52892 0.7 0.849556
Target:  5'- aGGCGCcGUGCGCAcgaUgGUGUA--GGCCg -3'
miRNA:   3'- -CCGCGcCACGUGU---AgCACAUgaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 52962 0.69 0.893719
Target:  5'- aGGUGCGcGUGCAgGcggcUCaUGUacgcGCUGACCu -3'
miRNA:   3'- -CCGCGC-CACGUgU----AGcACA----UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 53085 0.66 0.963882
Target:  5'- aGGCGCaGGUGCuCGUCcGUcaGCgggaGGCCg -3'
miRNA:   3'- -CCGCG-CCACGuGUAG-CAcaUGa---CUGG- -5'
29608 5' -53.7 NC_006151.1 + 54678 0.66 0.970186
Target:  5'- uGGC-CGGgcaccUGCGCGUCGccggcagcGUGCUGgGCCa -3'
miRNA:   3'- -CCGcGCC-----ACGUGUAGCa-------CAUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 54911 0.72 0.711532
Target:  5'- cGGCGCagcgcGUGCACggCGagGUGCUGGCg -3'
miRNA:   3'- -CCGCGc----CACGUGuaGCa-CAUGACUGg -5'
29608 5' -53.7 NC_006151.1 + 55978 0.69 0.879881
Target:  5'- uGCGaGGUGCGCGagGUGcccggGCUGAUCc -3'
miRNA:   3'- cCGCgCCACGUGUagCACa----UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 59548 0.67 0.95277
Target:  5'- cGCGCGG-GCACGUUGaaGU-CgggGGCCa -3'
miRNA:   3'- cCGCGCCaCGUGUAGCa-CAuGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 61817 0.66 0.960405
Target:  5'- aGCGUGGUGCucuacgcgGCGUCGac-GgUGGCCg -3'
miRNA:   3'- cCGCGCCACG--------UGUAGCacaUgACUGG- -5'
29608 5' -53.7 NC_006151.1 + 62094 0.72 0.741384
Target:  5'- cGGCGCGGUcggccuggGCGCGgcCGUGgucggGCUGAUg -3'
miRNA:   3'- -CCGCGCCA--------CGUGUa-GCACa----UGACUGg -5'
29608 5' -53.7 NC_006151.1 + 64217 0.73 0.691272
Target:  5'- cGGCGUGG-GCGCcUCGgcGUACagGGCCg -3'
miRNA:   3'- -CCGCGCCaCGUGuAGCa-CAUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 64769 0.68 0.918576
Target:  5'- uGCGCGGggGCugGUUGccgGggcgcgaGCUGGCCa -3'
miRNA:   3'- cCGCGCCa-CGugUAGCa--Ca------UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 67747 0.67 0.939563
Target:  5'- cGGCGCGGcgGCccCGUCGggGUGC-GGCg -3'
miRNA:   3'- -CCGCGCCa-CGu-GUAGCa-CAUGaCUGg -5'
29608 5' -53.7 NC_006151.1 + 68046 0.66 0.970186
Target:  5'- cGGCGCGGcggGCACGggcUCGgcgACgGGCa -3'
miRNA:   3'- -CCGCGCCa--CGUGU---AGCacaUGaCUGg -5'
29608 5' -53.7 NC_006151.1 + 71100 0.67 0.944204
Target:  5'- gGGCGCGG-GCGC--CGUGcGCU-ACCc -3'
miRNA:   3'- -CCGCGCCaCGUGuaGCACaUGAcUGG- -5'
29608 5' -53.7 NC_006151.1 + 72964 0.67 0.948605
Target:  5'- aGGC-CGGgccGCuCAUguUGUACUGGCCg -3'
miRNA:   3'- -CCGcGCCa--CGuGUAgcACAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 73693 0.75 0.578121
Target:  5'- cGGCGCGGcucUGCGCcgCGUGcug-GGCCa -3'
miRNA:   3'- -CCGCGCC---ACGUGuaGCACaugaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 73928 0.68 0.912721
Target:  5'- aGGcCGUGGUGCAgcgagcCGUCGUgcGUGCgcaugucccgcgUGGCCa -3'
miRNA:   3'- -CC-GCGCCACGU------GUAGCA--CAUG------------ACUGG- -5'
29608 5' -53.7 NC_006151.1 + 73996 0.67 0.939563
Target:  5'- cGGCGCcaccgaggccaGGagGgGCGUCGUGcGCUcGGCCa -3'
miRNA:   3'- -CCGCG-----------CCa-CgUGUAGCACaUGA-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 75392 0.68 0.918576
Target:  5'- cGGCGCGGgGCGgGUgCGUGcGCgGGuCCg -3'
miRNA:   3'- -CCGCGCCaCGUgUA-GCACaUGaCU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.