miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 38188 0.7 0.824684
Target:  5'- uGGCGCcgcuGGUGCGCuacagCGUGgACggGGCCc -3'
miRNA:   3'- -CCGCG----CCACGUGua---GCACaUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 2637 0.7 0.824684
Target:  5'- cGGCGCgGGUGCuCAcCGUGUAgcgcacguugucCUGGCg -3'
miRNA:   3'- -CCGCG-CCACGuGUaGCACAU------------GACUGg -5'
29608 5' -53.7 NC_006151.1 + 115210 0.7 0.824684
Target:  5'- gGGCGCGc-GCGCgAUCGUGgccGCUGccGCCg -3'
miRNA:   3'- -CCGCGCcaCGUG-UAGCACa--UGAC--UGG- -5'
29608 5' -53.7 NC_006151.1 + 19356 0.7 0.824684
Target:  5'- aGGCGUcGUGCAg--CGUGUAgaGGCCc -3'
miRNA:   3'- -CCGCGcCACGUguaGCACAUgaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 126136 0.7 0.833163
Target:  5'- gGGCGCuc-GC-CAUCGggcugcugGUGCUGGCCg -3'
miRNA:   3'- -CCGCGccaCGuGUAGCa-------CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 138251 0.7 0.841456
Target:  5'- gGGCGCGaccGCGCAgCGgGUGgUGGCCa -3'
miRNA:   3'- -CCGCGCca-CGUGUaGCaCAUgACUGG- -5'
29608 5' -53.7 NC_006151.1 + 99559 0.7 0.84472
Target:  5'- gGGCGCGGcgcgcgcggcgcugcUGCGCGagGUGgcgGC-GGCCg -3'
miRNA:   3'- -CCGCGCC---------------ACGUGUagCACa--UGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 130464 0.7 0.849556
Target:  5'- uGGCGUGGUGCAgGgCGaUGgcCUG-CCg -3'
miRNA:   3'- -CCGCGCCACGUgUaGC-ACauGACuGG- -5'
29608 5' -53.7 NC_006151.1 + 52892 0.7 0.849556
Target:  5'- aGGCGCcGUGCGCAcgaUgGUGUA--GGCCg -3'
miRNA:   3'- -CCGCGcCACGUGU---AgCACAUgaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 83602 0.69 0.861326
Target:  5'- aGGCGCGuGUGCagcagcagguacgGCGUCGcgaaggcggccugGUGCUGcGCCg -3'
miRNA:   3'- -CCGCGC-CACG-------------UGUAGCa------------CAUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 99502 0.69 0.872623
Target:  5'- gGGCGUGGaGCACGUgGUGcgccACUGcauggcGCCg -3'
miRNA:   3'- -CCGCGCCaCGUGUAgCACa---UGAC------UGG- -5'
29608 5' -53.7 NC_006151.1 + 55978 0.69 0.879881
Target:  5'- uGCGaGGUGCGCGagGUGcccggGCUGAUCc -3'
miRNA:   3'- cCGCgCCACGUGUagCACa----UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 95171 0.69 0.879881
Target:  5'- aGCGCca-GCACgGUCGUGUGCaGGCCc -3'
miRNA:   3'- cCGCGccaCGUG-UAGCACAUGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 121155 0.69 0.886915
Target:  5'- gGGcCGCuGGUGCAgAcggcCGUGUACgcGGCCg -3'
miRNA:   3'- -CC-GCG-CCACGUgUa---GCACAUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 136104 0.69 0.886915
Target:  5'- -uCGCGGUcggGCGCcgCGg--GCUGACCu -3'
miRNA:   3'- ccGCGCCA---CGUGuaGCacaUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 85128 0.69 0.893049
Target:  5'- cGCGCugugccugcaccuGGUGCACcgCGUGcgGCagggGGCCg -3'
miRNA:   3'- cCGCG-------------CCACGUGuaGCACa-UGa---CUGG- -5'
29608 5' -53.7 NC_006151.1 + 52962 0.69 0.893719
Target:  5'- aGGUGCGcGUGCAgGcggcUCaUGUacgcGCUGACCu -3'
miRNA:   3'- -CCGCGC-CACGUgU----AGcACA----UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 86578 0.69 0.893719
Target:  5'- cGGCGCGG-GCGCGcucCGaGcUGCUGGCg -3'
miRNA:   3'- -CCGCGCCaCGUGUa--GCaC-AUGACUGg -5'
29608 5' -53.7 NC_006151.1 + 83269 0.69 0.893719
Target:  5'- cGGCGCcccgagcucaGGUaGCGCGaCGUGU--UGACCa -3'
miRNA:   3'- -CCGCG----------CCA-CGUGUaGCACAugACUGG- -5'
29608 5' -53.7 NC_006151.1 + 119139 0.68 0.900291
Target:  5'- gGGCGCuGGUGUuCAgcuccaacUCG-GUGCUGuACCu -3'
miRNA:   3'- -CCGCG-CCACGuGU--------AGCaCAUGAC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.