miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 137054 0.79 0.355936
Target:  5'- cGGCGcCGGUGUACcgCGUGgaGCUGGCg -3'
miRNA:   3'- -CCGC-GCCACGUGuaGCACa-UGACUGg -5'
29608 5' -53.7 NC_006151.1 + 73693 0.75 0.578121
Target:  5'- cGGCGCGGcucUGCGCcgCGUGcug-GGCCa -3'
miRNA:   3'- -CCGCGCC---ACGUGuaGCACaugaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 77626 0.75 0.598634
Target:  5'- cGCGCGGaGCugGaCGUGUAC-GACCc -3'
miRNA:   3'- cCGCGCCaCGugUaGCACAUGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 132804 0.73 0.660527
Target:  5'- aGGCGCuGGUacaGCGCGUCcgg-GCUGGCCg -3'
miRNA:   3'- -CCGCG-CCA---CGUGUAGcacaUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 64217 0.73 0.691272
Target:  5'- cGGCGUGG-GCGCcUCGgcGUACagGGCCg -3'
miRNA:   3'- -CCGCGCCaCGUGuAGCa-CAUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 39351 0.73 0.698389
Target:  5'- cGGCGCGGcgccgGCuCAUCGUGcUggacaccaucgaggACUGGCCc -3'
miRNA:   3'- -CCGCGCCa----CGuGUAGCAC-A--------------UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 54911 0.72 0.711532
Target:  5'- cGGCGCagcgcGUGCACggCGagGUGCUGGCg -3'
miRNA:   3'- -CCGCGc----CACGUGuaGCa-CAUGACUGg -5'
29608 5' -53.7 NC_006151.1 + 125536 0.72 0.721564
Target:  5'- cGGUGCguggaGGUGCGCGgcggCGUGUAC-GugCa -3'
miRNA:   3'- -CCGCG-----CCACGUGUa---GCACAUGaCugG- -5'
29608 5' -53.7 NC_006151.1 + 122222 0.72 0.721564
Target:  5'- uGCGCGGUGUGCuUCGagGaGCUGugCg -3'
miRNA:   3'- cCGCGCCACGUGuAGCa-CaUGACugG- -5'
29608 5' -53.7 NC_006151.1 + 104571 0.72 0.721564
Target:  5'- cGCGCGGcGCGCGgaCGUGcUGCaGGCCg -3'
miRNA:   3'- cCGCGCCaCGUGUa-GCAC-AUGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 62094 0.72 0.741384
Target:  5'- cGGCGCGGUcggccuggGCGCGgcCGUGgucggGCUGAUg -3'
miRNA:   3'- -CCGCGCCA--------CGUGUa-GCACa----UGACUGg -5'
29608 5' -53.7 NC_006151.1 + 99090 0.72 0.760815
Target:  5'- uGGCGCGGcgccUGCGCA-CGgaccagggcGUGCUGGCg -3'
miRNA:   3'- -CCGCGCC----ACGUGUaGCa--------CAUGACUGg -5'
29608 5' -53.7 NC_006151.1 + 86235 0.71 0.770361
Target:  5'- -cCGCGcUGCgACAUCGgcgccGUGCUGGCCg -3'
miRNA:   3'- ccGCGCcACG-UGUAGCa----CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 90137 0.71 0.770361
Target:  5'- cGGgGCGGUaguGCGCGUCGggcccGCUGGCg -3'
miRNA:   3'- -CCgCGCCA---CGUGUAGCaca--UGACUGg -5'
29608 5' -53.7 NC_006151.1 + 85546 0.71 0.779782
Target:  5'- cGGCGCcugcUGCACAacggcaaCGUGUACgggGACCg -3'
miRNA:   3'- -CCGCGcc--ACGUGUa------GCACAUGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 123764 0.71 0.786296
Target:  5'- uGGCGCGGgccccggGgGCAUCggcccgggcaccacGgcgGUGCUGGCCu -3'
miRNA:   3'- -CCGCGCCa------CgUGUAG--------------Ca--CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 119993 0.71 0.789067
Target:  5'- uGGCGCGGcGCACGcugcuggCG-GUGCUgcagGACCu -3'
miRNA:   3'- -CCGCGCCaCGUGUa------GCaCAUGA----CUGG- -5'
29608 5' -53.7 NC_006151.1 + 118433 0.71 0.79821
Target:  5'- gGGCGCGGaggugUGCGCG-CGgcucGgcCUGGCCg -3'
miRNA:   3'- -CCGCGCC-----ACGUGUaGCa---CauGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 99889 0.71 0.79821
Target:  5'- cGCGCGGaccugGCGCAg---GUGCUGACg -3'
miRNA:   3'- cCGCGCCa----CGUGUagcaCAUGACUGg -5'
29608 5' -53.7 NC_006151.1 + 38188 0.7 0.824684
Target:  5'- uGGCGCcgcuGGUGCGCuacagCGUGgACggGGCCc -3'
miRNA:   3'- -CCGCG----CCACGUGua---GCACaUGa-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.