miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 1004 0.67 0.92903
Target:  5'- gGGCGaUGGUugcaacgGCAguUCccUGUACUGACCa -3'
miRNA:   3'- -CCGC-GCCA-------CGUguAGc-ACAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 2637 0.7 0.824684
Target:  5'- cGGCGCgGGUGCuCAcCGUGUAgcgcacguugucCUGGCg -3'
miRNA:   3'- -CCGCG-CCACGuGUaGCACAU------------GACUGg -5'
29608 5' -53.7 NC_006151.1 + 4798 0.66 0.967141
Target:  5'- cGGCGCGGUaGCGgGcCGcGgcCUGGCg -3'
miRNA:   3'- -CCGCGCCA-CGUgUaGCaCauGACUGg -5'
29608 5' -53.7 NC_006151.1 + 5124 0.66 0.963882
Target:  5'- cGGCGCGG-GCGa---GUGggGCgccgGGCCg -3'
miRNA:   3'- -CCGCGCCaCGUguagCACa-UGa---CUGG- -5'
29608 5' -53.7 NC_006151.1 + 14979 0.68 0.912721
Target:  5'- aGCGCGGgcGCuACGUCGUcgagcaccccgaGUACgGGCCc -3'
miRNA:   3'- cCGCGCCa-CG-UGUAGCA------------CAUGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 18163 0.68 0.912721
Target:  5'- cGGCgGCGG-GCAUGUCGgaaUGCgggcgGGCCg -3'
miRNA:   3'- -CCG-CGCCaCGUGUAGCac-AUGa----CUGG- -5'
29608 5' -53.7 NC_006151.1 + 18696 0.66 0.967141
Target:  5'- cGCGCGGgcgGCGCcggcGUCGUG-AC--GCCg -3'
miRNA:   3'- cCGCGCCa--CGUG----UAGCACaUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 19356 0.7 0.824684
Target:  5'- aGGCGUcGUGCAg--CGUGUAgaGGCCc -3'
miRNA:   3'- -CCGCGcCACGUguaGCACAUgaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 20485 0.68 0.906626
Target:  5'- gGGCGCGGgGguCGUCGgcggcuCUGGCUc -3'
miRNA:   3'- -CCGCGCCaCguGUAGCacau--GACUGG- -5'
29608 5' -53.7 NC_006151.1 + 22288 0.66 0.960405
Target:  5'- cGGCGCGG-GCACggCGUccACgu-CCg -3'
miRNA:   3'- -CCGCGCCaCGUGuaGCAcaUGacuGG- -5'
29608 5' -53.7 NC_006151.1 + 25267 0.67 0.934681
Target:  5'- uGGUGCGcGaGUugGUgUGUGUGCUuGGCCg -3'
miRNA:   3'- -CCGCGC-CaCGugUA-GCACAUGA-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 27086 0.68 0.916845
Target:  5'- gGGCGCGGcgcaggGCGCG-CGUGUcgcccgucacgucgGC-GGCCg -3'
miRNA:   3'- -CCGCGCCa-----CGUGUaGCACA--------------UGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 31433 0.66 0.956702
Target:  5'- gGGaCGgGGUGCGCGcgCGUGUGuguaUGugUa -3'
miRNA:   3'- -CC-GCgCCACGUGUa-GCACAUg---ACugG- -5'
29608 5' -53.7 NC_006151.1 + 38188 0.7 0.824684
Target:  5'- uGGCGCcgcuGGUGCGCuacagCGUGgACggGGCCc -3'
miRNA:   3'- -CCGCG----CCACGUGua---GCACaUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 39351 0.73 0.698389
Target:  5'- cGGCGCGGcgccgGCuCAUCGUGcUggacaccaucgaggACUGGCCc -3'
miRNA:   3'- -CCGCGCCa----CGuGUAGCAC-A--------------UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 39453 0.66 0.956702
Target:  5'- cGGcCGCccaGUGCGC--CGUGcGCUGGCCc -3'
miRNA:   3'- -CC-GCGc--CACGUGuaGCACaUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 44657 0.66 0.963882
Target:  5'- uGGcCGCGGcagcccgacacaUGCGCAcggCGgccgGcgGCUGACCg -3'
miRNA:   3'- -CC-GCGCC------------ACGUGUa--GCa---Ca-UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 44920 0.67 0.934681
Target:  5'- aGGgGCGuGUGCGCGUaaaGUGCgaGGCCc -3'
miRNA:   3'- -CCgCGC-CACGUGUAgcaCAUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 45406 0.66 0.956702
Target:  5'- uGGUgGUGGUGC-CggUGUGUugUGgGCCg -3'
miRNA:   3'- -CCG-CGCCACGuGuaGCACAugAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 46501 0.67 0.939563
Target:  5'- aGCGgGGUGCACA-CGgaggauCUGACg -3'
miRNA:   3'- cCGCgCCACGUGUaGCacau--GACUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.