miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 142014 0.68 0.918576
Target:  5'- uGGgGCGGgugugGCACcaCGUGggugcauCUGACCc -3'
miRNA:   3'- -CCgCGCCa----CGUGuaGCACau-----GACUGG- -5'
29608 5' -53.7 NC_006151.1 + 138717 0.68 0.924187
Target:  5'- uGCGCGccGCGCgcggGUCGUGUACgcgcGCCg -3'
miRNA:   3'- cCGCGCcaCGUG----UAGCACAUGac--UGG- -5'
29608 5' -53.7 NC_006151.1 + 138251 0.7 0.841456
Target:  5'- gGGCGCGaccGCGCAgCGgGUGgUGGCCa -3'
miRNA:   3'- -CCGCGCca-CGUGUaGCaCAUgACUGG- -5'
29608 5' -53.7 NC_006151.1 + 137770 0.67 0.929556
Target:  5'- uGGCGCGcGUGCuccaGCAggcCGUGcUGCUGGa- -3'
miRNA:   3'- -CCGCGC-CACG----UGUa--GCAC-AUGACUgg -5'
29608 5' -53.7 NC_006151.1 + 137086 0.68 0.912721
Target:  5'- cGGCGCcagGC-CuUCGcgGUGCUGGCCg -3'
miRNA:   3'- -CCGCGccaCGuGuAGCa-CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 137054 0.79 0.355936
Target:  5'- cGGCGcCGGUGUACcgCGUGgaGCUGGCg -3'
miRNA:   3'- -CCGC-GCCACGUGuaGCACa-UGACUGg -5'
29608 5' -53.7 NC_006151.1 + 136104 0.69 0.886915
Target:  5'- -uCGCGGUcggGCGCcgCGg--GCUGACCu -3'
miRNA:   3'- ccGCGCCA---CGUGuaGCacaUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 135448 0.67 0.942837
Target:  5'- uGCGCuggcaggccugguaGGUGCGCGccagCGUGUccGCgcgGGCCa -3'
miRNA:   3'- cCGCG--------------CCACGUGUa---GCACA--UGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 133672 0.67 0.938124
Target:  5'- cGGCGCGGcgGCGCGcccccgaggcggucUCGUcgGCggcGACCc -3'
miRNA:   3'- -CCGCGCCa-CGUGU--------------AGCAcaUGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 132804 0.73 0.660527
Target:  5'- aGGCGCuGGUacaGCGCGUCcgg-GCUGGCCg -3'
miRNA:   3'- -CCGCG-CCA---CGUGUAGcacaUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 130958 0.67 0.948605
Target:  5'- cGCGCGG-GCGCGggGgccgGUACcccGGCCg -3'
miRNA:   3'- cCGCGCCaCGUGUagCa---CAUGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 130464 0.7 0.849556
Target:  5'- uGGCGUGGUGCAgGgCGaUGgcCUG-CCg -3'
miRNA:   3'- -CCGCGCCACGUgUaGC-ACauGACuGG- -5'
29608 5' -53.7 NC_006151.1 + 130344 0.66 0.963882
Target:  5'- cGCGCGccGCgGCGUCGUGguugAC-GGCCg -3'
miRNA:   3'- cCGCGCcaCG-UGUAGCACa---UGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 126136 0.7 0.833163
Target:  5'- gGGCGCuc-GC-CAUCGggcugcugGUGCUGGCCg -3'
miRNA:   3'- -CCGCGccaCGuGUAGCa-------CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 125536 0.72 0.721564
Target:  5'- cGGUGCguggaGGUGCGCGgcggCGUGUAC-GugCa -3'
miRNA:   3'- -CCGCG-----CCACGUGUa---GCACAUGaCugG- -5'
29608 5' -53.7 NC_006151.1 + 123764 0.71 0.786296
Target:  5'- uGGCGCGGgccccggGgGCAUCggcccgggcaccacGgcgGUGCUGGCCu -3'
miRNA:   3'- -CCGCGCCa------CgUGUAG--------------Ca--CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 123271 0.67 0.947744
Target:  5'- cGCGCGG-GCAcCGUCGUGgacgagcgcgagACgGGCUg -3'
miRNA:   3'- cCGCGCCaCGU-GUAGCACa-----------UGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 123154 0.67 0.952364
Target:  5'- cGGCGCGaGcuggagaagacccUGCGCGUgaaCGUGUACggcGACg -3'
miRNA:   3'- -CCGCGC-C-------------ACGUGUA---GCACAUGa--CUGg -5'
29608 5' -53.7 NC_006151.1 + 122222 0.72 0.721564
Target:  5'- uGCGCGGUGUGCuUCGagGaGCUGugCg -3'
miRNA:   3'- cCGCGCCACGUGuAGCa-CaUGACugG- -5'
29608 5' -53.7 NC_006151.1 + 121912 0.66 0.967141
Target:  5'- cGCGCGGgccgagggGgACcgCGUGcugggggcGCUGGCCg -3'
miRNA:   3'- cCGCGCCa-------CgUGuaGCACa-------UGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.