miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 3' -54.7 NC_006151.1 + 46529 0.66 0.93334
Target:  5'- aGGCcuccgaGUCCGCGGACGaccagaGGCCGg--- -3'
miRNA:   3'- -UCGag----CAGGUGCCUGCg-----CUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 50029 0.77 0.364752
Target:  5'- cGCggCGcCCcCGGGCGCGGCCAUAAAa -3'
miRNA:   3'- uCGa-GCaGGuGCCUGCGCUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 50110 0.71 0.685471
Target:  5'- cAGCUCcgGUCCGCGGuGCGCGcCCGa--- -3'
miRNA:   3'- -UCGAG--CAGGUGCC-UGCGCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 50469 0.72 0.654357
Target:  5'- cGCUCGcgCCAgCGcGGCGCGACCGa--- -3'
miRNA:   3'- uCGAGCa-GGU-GC-CUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 51339 0.68 0.838101
Target:  5'- cGGCUcccCGUCCACGGccaG-GACCGUGAGc -3'
miRNA:   3'- -UCGA---GCAGGUGCCug-CgCUGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 53094 0.67 0.898169
Target:  5'- uGCUCGUCCgucaGCGGGa--GGCCGUAc- -3'
miRNA:   3'- uCGAGCAGG----UGCCUgcgCUGGUAUuu -5'
29609 3' -54.7 NC_006151.1 + 55077 0.68 0.861494
Target:  5'- gGGCUCGgCCGCGG-CGCGccucgugcgccucAUCGUGAAc -3'
miRNA:   3'- -UCGAGCaGGUGCCuGCGC-------------UGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 57508 0.69 0.812184
Target:  5'- cGCUCGgCCGCGGcgGCGgCGGCCGc--- -3'
miRNA:   3'- uCGAGCaGGUGCC--UGC-GCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 58773 0.71 0.706
Target:  5'- gAGCcCGUCCACGG-CGCcGCCGUc-- -3'
miRNA:   3'- -UCGaGCAGGUGCCuGCGcUGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 58947 0.69 0.821004
Target:  5'- cGCaaaGUCCACGGcccccucgguGCGCGGCCAc--- -3'
miRNA:   3'- uCGag-CAGGUGCC----------UGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 59763 0.73 0.591857
Target:  5'- cAGCUCGUCCuCGGgcACGuCGGCCAcGAGg -3'
miRNA:   3'- -UCGAGCAGGuGCC--UGC-GCUGGUaUUU- -5'
29609 3' -54.7 NC_006151.1 + 62099 0.69 0.794043
Target:  5'- cGgUCGgCCugGG-CGCGGCCGUGGu -3'
miRNA:   3'- uCgAGCaGGugCCuGCGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 64487 0.67 0.877316
Target:  5'- gGGgaCGcCCGCGGGCGCGGgCGg--- -3'
miRNA:   3'- -UCgaGCaGGUGCCUGCGCUgGUauuu -5'
29609 3' -54.7 NC_006151.1 + 65190 0.66 0.930224
Target:  5'- cGCggGUCCGCGaGCGCGcugcgcgaguugaggGCCAUGAGg -3'
miRNA:   3'- uCGagCAGGUGCcUGCGC---------------UGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 68230 0.67 0.884501
Target:  5'- aGGCgcagCGcCCGCGGGCGCGuCagGUAGAc -3'
miRNA:   3'- -UCGa---GCaGGUGCCUGCGCuGg-UAUUU- -5'
29609 3' -54.7 NC_006151.1 + 68844 0.69 0.794043
Target:  5'- uGCUCGaggcgCCGCGcGACGCGuCCAg--- -3'
miRNA:   3'- uCGAGCa----GGUGC-CUGCGCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 68956 0.67 0.896845
Target:  5'- cGGCUCGcggcgcacggacUCGCGGACGCcGGCCAg--- -3'
miRNA:   3'- -UCGAGCa-----------GGUGCCUGCG-CUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 69595 0.7 0.775296
Target:  5'- gAGCUCGgCCGCGcGGCGC-ACCAg--- -3'
miRNA:   3'- -UCGAGCaGGUGC-CUGCGcUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 71091 0.68 0.846362
Target:  5'- cGGCg---CCGCGGGCGCGggcGCCGUGc- -3'
miRNA:   3'- -UCGagcaGGUGCCUGCGC---UGGUAUuu -5'
29609 3' -54.7 NC_006151.1 + 73299 0.66 0.93334
Target:  5'- aGGUagUCGUCCGCGucCGCGuCCAg--- -3'
miRNA:   3'- -UCG--AGCAGGUGCcuGCGCuGGUauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.